Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0425
(443 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 130 7e-32
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 69 3e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 66 2e-12
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 66 2e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 48 6e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 3e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 38 0.001
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.14
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 2.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 2.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.0
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 3.0
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 25 6.9
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 25 6.9
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 25 6.9
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 24 9.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 130 bits (315), Expect = 7e-32
Identities = 57/63 (90%), Positives = 59/63 (93%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPDEHPVLLTEAALNPKANREKM 434
SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAP+EHP LLTEA LNPK+NREKM
Sbjct: 60 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKM 119
Query: 435 THI 443
T I
Sbjct: 120 TQI 122
Score = 120 bits (289), Expect = 1e-28
Identities = 52/60 (86%), Positives = 58/60 (96%)
Frame = +1
Query: 82 DEEVAALVVDNGSGMCKAGFSGDDAPRAVFPSIVGRPRHQGVMVGMGHKDSYVGDEAQAK 261
+EE+AALV+DNGSGMCKAGF+GDDAPRAVFPSIVGRPRH G+MVGMG KDSYVGDEAQ+K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 68.9 bits (161), Expect = 3e-13
Identities = 26/58 (44%), Positives = 44/58 (75%)
Frame = +3
Query: 261 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPDEHPVLLTEAALNPKANREKM 434
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE +NP ANREKM
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKM 119
Score = 54.4 bits (125), Expect = 7e-09
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +1
Query: 88 EVAALVVDNGSGMCKAGFSGDDAPRAVFPSIVGRP--RHQGVMVGMGHKDSYVGDEAQA 258
E A +V+DNG+G K G++ D+ PR FPSIVGRP R + + KD VGDEA+A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 66.1 bits (154), Expect = 2e-12
Identities = 27/57 (47%), Positives = 34/57 (59%)
Frame = +3
Query: 273 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPDEHPVLLTEAALNPKANREKMTHI 443
+L YPI HG + NWD ME+ W + + LR P++H LLTE LNP NRE I
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEI 145
Score = 41.1 bits (92), Expect = 7e-05
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFSGDDAPRAVFPSIVGRPRHQGVMVG--MGHKDSYVGDE 249
+++DNG+G K G++G+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 66.1 bits (154), Expect = 2e-12
Identities = 28/52 (53%), Positives = 37/52 (71%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFSGDDAPRAVFPSIVGRPRHQGVMVGMGHKDSYVGDEAQ 255
+ +DNGSG KAGF+GDD P+ +FP+ VGR +H+ VM KD +VG EAQ
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63
Score = 64.9 bits (151), Expect = 5e-12
Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Frame = +3
Query: 261 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPDEHPVLLTEAALNPKANREKM 434
RG+L ++ PIE GI+ NW DME+IW + + + +L P+EHP+LLTE L N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKI 124
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 48.0 bits (109), Expect = 6e-07
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +3
Query: 270 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPDEHPVLLTEAALNPKANREK 431
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK 116
Score = 41.5 bits (93), Expect = 6e-05
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFSGDDAPRAVFPSIVG 186
+EV+A+V+D GS + GFSG+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 45.6 bits (103), Expect = 3e-06
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +3
Query: 285 PIEHGIVTNWDDMEKIWHHTFYNELRVAPDEHPVLLTEAALNPKANREKMTHI 443
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT +
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTEL 137
Score = 35.9 bits (79), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFSGDDAPRAVFPSIVGRPR 195
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 37.5 bits (83), Expect = 0.001
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFSGDDAPRAVFPSIVGRPRHQGVMVGMGHKDSYVGDEAQ 255
EE+ +LV+D GS + G++G+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
Score = 36.7 bits (81), Expect = 0.002
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = +3
Query: 294 HGIVTNWDDMEKIWHHTFYNELRVAPDEHPVLLTEAALNPKANREKM 434
+GI+ +W+ W +L+V P E+ +++TE + NP++ R+++
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQI 120
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.3 bits (65), Expect = 0.14
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 242 PT*ESLCPI-PTITP*WRGLPTIEGNTARGASSPEKPALHIPEPLSTTNAATSSS 81
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 345 FYNELRVAPDEHPVLLTE--AALNPKANREKMTHI 443
+Y L ++HP+LLT+ AAL P+ + ++ I
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRI 1433
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 145 GDDAPRAVFPSIVGRPRHQGVMVGMGHKDSYVGDE 249
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 221 PIPTITP*WRGLPTIEGNTARGASSPEKPAL 129
P+PT P LPT NT + P PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 3.0
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 285 PIEHGIVTNWDDMEKIWHHTF 347
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 6.9
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -1
Query: 317 IPVSYDSVFDGVFEGQDTSFA*ASSPT*ESLCPIPTITP*WRGLPTIEGNTARGASSPEK 138
+P +V +TSFA ++ SL PT + P +E + +S+P
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 137 PALHIP 120
P L+ P
Sbjct: 123 PQLNSP 128
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 6.9
Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +3
Query: 300 IVTNWDDME-KIWH--HTFYNELRVAPDEHPVLLTEAALNP 413
++ + DD +W+ HTF+++ + P EH + ++++ +NP
Sbjct: 271 VIGSADDRTLNVWNLRHTFHHKGKTRPPEHRI-VSQSIINP 310
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 24.6 bits (51), Expect = 6.9
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -1
Query: 383 GVFIGGDTQLIVEGMMPNLLHVIPVSYDSVFDGVFEGQDTSFA 255
GVF GD ++ PN VI D D F D SF+
Sbjct: 265 GVFTTGDICKVLRKEFPNKSDVIAEPVDITVDPSFFKLDNSFS 307
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 24.2 bits (50), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 132 LAHTGAIVYYQRGNFFVAHLELVF 61
L TGAIV Y G FF + L+F
Sbjct: 56 LFRTGAIVAYILGMFFTSSFMLLF 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,744
Number of Sequences: 5004
Number of extensions: 36164
Number of successful extensions: 113
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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