Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0424
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77668-3|CAI46576.1|  284|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z77655-9|CAI46567.1|  284|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z81139-6|CAH60791.2|  358|Caenorhabditis elegans Hypothetical pr...    25   4.1  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine re...    28   5.9  
U80455-4|AAY55873.2|  315|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z77668-3|CAI46576.1|  284|Caenorhabditis elegans Hypothetical
           protein R11G10.3 protein.
          Length = 284

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 198 CRTIQYTCASFHWIVLSIVINEYLHNNMFGCLYQFILMFIVYIC 329
           C+ + Y C  F  IV  ++++ Y H   F    Q  L F++ +C
Sbjct: 125 CQWVPYICGQFICIVFVVLMSLYQHEESFVNNIQVALSFVICLC 168


>Z77655-9|CAI46567.1|  284|Caenorhabditis elegans Hypothetical
           protein R11G10.3 protein.
          Length = 284

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 198 CRTIQYTCASFHWIVLSIVINEYLHNNMFGCLYQFILMFIVYIC 329
           C+ + Y C  F  IV  ++++ Y H   F    Q  L F++ +C
Sbjct: 125 CQWVPYICGQFICIVFVVLMSLYQHEESFVNNIQVALSFVICLC 168


>Z81139-6|CAH60791.2|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.8 protein.
          Length = 358

 Score = 25.4 bits (53), Expect(2) = 4.1
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 234 WIVLSIVINEYLHNNMFGCLYQFILMFIVYICNYISVQICMYWFMVFL*RCDVV 395
           +I+ S  +N Y+H  +   L+   L    YI   +SV IC+ W+++   +C V+
Sbjct: 40  YILCSQAVNAYVHVTLKIRLFHRNL----YI---LSVPICILWYLLIAGKCIVI 86



 Score = 21.8 bits (44), Expect(2) = 4.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 489 IIEFYCRNVIDIDFPWGIHTN 551
           I+  Y  N + ID P G HTN
Sbjct: 84  IVIGYRLNFLKIDVPIGEHTN 104


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 165  FMYTYHKYYRSGFICKDD--YNNKDHQMEIYCFITIRF 58
            +M TY   YR  F    D   NN   + EI C +T+RF
Sbjct: 2422 YMQTYRNVYRMAFGVTGDSLVNNPLFESEIMCAMTLRF 2459


>AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine
           receptor, class v protein21 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 85  FHLMIFIVVIIFTNKS*PIIFVIGIHKILKK*FS*YSLVGPFNILVHHS 231
           + L+IFI  +        ++FV+ + +     +   S +GPF IL+ ++
Sbjct: 248 YFLLIFITSLCSAGTIRDMVFVVAVRRNFPTAYGTLSFIGPFTILIFNN 296


>U80455-4|AAY55873.2|  315|Caenorhabditis elegans Hypothetical
           protein T01D1.7 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 201 RTIQYTCASFHWIVLSIVINEYLHNNMFGCLYQFILMFIVYIC 329
           +T  Y C + H I++ I +  ++  + F  L+     F VY C
Sbjct: 11  QTTLYMCLNIHHILVLITVRRFMKGSSFFFLFFVTGCFDVYYC 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,476,205
Number of Sequences: 27780
Number of extensions: 364925
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)