Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0422
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    75   1e-14
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   4.0  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   9.2  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
 Frame = +1

Query: 16  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 189
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 190 MPKLKAFQKIQIRLVRELEKK 252
            P LKAF K Q RL RELEKK
Sbjct: 66  QPLLKAFHKCQARLTRELEKK 86



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 28/47 (59%), Positives = 38/47 (80%)
 Frame = +3

Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
           K+ + +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V++AILE
Sbjct: 85  KKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILE 129


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 280  ETVRSCLSPATKPVLLTNKRGHAQ 351
            E+ +  ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 671 GRKSGKNPLIKSKRIDRDKGLSVCSSFGTR 760
           G++   NPL K    DRD  + + SS G+R
Sbjct: 46  GQQQPLNPLAKPIEQDRDAIIRILSSIGSR 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,040
Number of Sequences: 5004
Number of extensions: 61079
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)