Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0422
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 78 7e-15
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 64 2e-10
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 37 0.021
09_02_0036 + 3217163-3217584,3217752-3218322 30 1.8
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 5.4
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 5.4
03_02_0488 - 8824980-8825267,8825364-8827775 29 5.4
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 28 7.2
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 28 7.2
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 28 7.2
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 9.5
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 78.2 bits (184), Expect = 7e-15
Identities = 39/81 (48%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 189
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KAF+KI +RLVRELEKK
Sbjct: 67 YRLRKAFKKIHVRLVRELEKK 87
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
K+ SGK VV V R+I+ P + V +RPR+RTLT+V+D ILE
Sbjct: 86 KKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILE 128
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 63.7 bits (148), Expect = 2e-10
Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Frame = +1
Query: 70 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 243
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 244 EKK 252
EKK
Sbjct: 98 EKK 100
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
K+ SGK VV V R+I+ P + V RPR+RTLT+V+D ILE
Sbjct: 99 KKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILE 141
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +1
Query: 124 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKK
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKK 72
Score = 35.5 bits (78), Expect = 0.047
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
K+ SGK VVF R+I+ +P +K + PR+RTL +V+D ILE
Sbjct: 71 KKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGILE 113
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 425 ITIHWPSFYNVV-TGKTLALPNLIALQH 505
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 76 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 210
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 76 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 210
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 25 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 201
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 202 KAFQKI 219
+ +++
Sbjct: 359 DSSEEL 364
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 495 PCSTSPFASWRNSEKARTDRPSQQLRSLNG 584
P PF SW N +A D+ + L LNG
Sbjct: 402 PSRQDPFTSWDNMRQACLDKGTHALGKLNG 431
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 495 PCSTSPFASWRNSEKARTDRPSQQLRSLNG 584
P PF SW N +A D+ + L LNG
Sbjct: 407 PSRQDPFTSWDNMRQACLDKGTHALGKLNG 436
>03_02_0568 +
9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/92 (23%), Positives = 43/92 (46%)
Frame = +1
Query: 22 IKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 201
I SGA + + S L +L + Q ++YITK +++ +K+ IY+P +
Sbjct: 323 IARSGAREANQKVCKSVILKDLYQEMERMKQGSQVYITKLSDVKAAREKN-GIYIPQERF 381
Query: 202 KAFQKIQIRLVRELEKKLVVNM*SLLETVRSC 297
A ++ + + +R+ + L L + SC
Sbjct: 382 -ALEEAEKKTMRDKIEYLETQNKELKMNIESC 412
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +1
Query: 76 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 210
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,851,802
Number of Sequences: 37544
Number of extensions: 431074
Number of successful extensions: 1259
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -