Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0422
(778 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7 prot... 113 9e-25
M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein. 113 9e-25
BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7 pr... 113 9e-25
BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7 pr... 113 9e-25
BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7 pr... 113 9e-25
AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein. 113 9e-25
BC073744-1|AAH73744.1| 648|Homo sapiens ITSN1 protein protein. 32 2.6
BC044808-1|AAH44808.1| 440|Homo sapiens C14orf45 protein protein. 31 6.1
DQ679757-1|ABG74698.1| 1215|Homo sapiens intersectin 1 short for... 30 8.1
DQ679756-1|ABG74697.1| 1178|Homo sapiens intersectin 1 short for... 30 8.1
DQ679755-1|ABG74696.1| 1149|Homo sapiens intersectin 1 short for... 30 8.1
DQ679754-1|ABG74695.1| 1144|Homo sapiens intersectin 1 short for... 30 8.1
DQ386455-1|ABD72328.1| 1020|Homo sapiens intersectin 1 short for... 30 8.1
DQ340865-1|ABC69037.1| 1076|Homo sapiens intersectin 1 short for... 30 8.1
BX538175-1|CAD98050.1| 627|Homo sapiens hypothetical protein pr... 30 8.1
BC117560-1|AAI17561.1| 1144|Homo sapiens ITSN1 protein protein. 30 8.1
BC116186-1|AAI16187.1| 1721|Homo sapiens intersectin 1 (SH3 doma... 30 8.1
BC116185-1|AAI16186.1| 1716|Homo sapiens ITSN1 protein protein. 30 8.1
AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250... 30 8.1
AF114488-1|AAD29953.1| 1220|Homo sapiens intersectin short isofo... 30 8.1
AF114487-1|AAD29952.1| 1721|Homo sapiens intersectin long isofor... 30 8.1
AF064244-1|AAC78611.1| 1721|Homo sapiens intersectin long form p... 30 8.1
AF064243-1|AAC78610.1| 1220|Homo sapiens intersectin short form ... 30 8.1
AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associ... 30 8.1
>Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 113 bits (271), Expect = 9e-25
Identities = 57/82 (69%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Frame = +1
Query: 10 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIEL-HNKKSIIIYV 186
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 187 PMPKLKAFQKIQIRLVRELEKK 252
P+P+LK+FQKIQ+RLVRELEKK
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKK 86
Score = 77.0 bits (181), Expect = 7e-14
Identities = 34/47 (72%), Positives = 41/47 (87%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
K+ SGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+DAILE
Sbjct: 85 KKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILE 131
>M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein.
Length = 192
Score = 113 bits (271), Expect = 9e-25
Identities = 57/82 (69%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Frame = +1
Query: 10 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIEL-HNKKSIIIYV 186
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 3 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 62
Query: 187 PMPKLKAFQKIQIRLVRELEKK 252
P+P+LK+FQKIQ+RLVRELEKK
Sbjct: 63 PVPQLKSFQKIQVRLVRELEKK 84
Score = 77.0 bits (181), Expect = 7e-14
Identities = 34/47 (72%), Positives = 41/47 (87%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
K+ SGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+DAILE
Sbjct: 83 KKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILE 129
>BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 113 bits (271), Expect = 9e-25
Identities = 57/82 (69%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Frame = +1
Query: 10 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIEL-HNKKSIIIYV 186
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 187 PMPKLKAFQKIQIRLVRELEKK 252
P+P+LK+FQKIQ+RLVRELEKK
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKK 86
Score = 77.0 bits (181), Expect = 7e-14
Identities = 34/47 (72%), Positives = 41/47 (87%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
K+ SGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+DAILE
Sbjct: 85 KKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILE 131
>BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 113 bits (271), Expect = 9e-25
Identities = 57/82 (69%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Frame = +1
Query: 10 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIEL-HNKKSIIIYV 186
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 187 PMPKLKAFQKIQIRLVRELEKK 252
P+P+LK+FQKIQ+RLVRELEKK
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKK 86
Score = 77.0 bits (181), Expect = 7e-14
Identities = 34/47 (72%), Positives = 41/47 (87%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
K+ SGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+DAILE
Sbjct: 85 KKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILE 131
>BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 113 bits (271), Expect = 9e-25
Identities = 57/82 (69%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Frame = +1
Query: 10 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIEL-HNKKSIIIYV 186
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 187 PMPKLKAFQKIQIRLVRELEKK 252
P+P+LK+FQKIQ+RLVRELEKK
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKK 86
Score = 77.0 bits (181), Expect = 7e-14
Identities = 34/47 (72%), Positives = 41/47 (87%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
K+ SGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+DAILE
Sbjct: 85 KKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILE 131
>AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein.
Length = 194
Score = 113 bits (271), Expect = 9e-25
Identities = 57/82 (69%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Frame = +1
Query: 10 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIEL-HNKKSIIIYV 186
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 187 PMPKLKAFQKIQIRLVRELEKK 252
P+P+LK+FQKIQ+RLVRELEKK
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKK 86
Score = 77.0 bits (181), Expect = 7e-14
Identities = 34/47 (72%), Positives = 41/47 (87%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
K+ SGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+V+DAILE
Sbjct: 85 KKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILE 131
>BC073744-1|AAH73744.1| 648|Homo sapiens ITSN1 protein protein.
Length = 648
Score = 31.9 bits (69), Expect = 2.6
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEKK
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKK 645
>BC044808-1|AAH44808.1| 440|Homo sapiens C14orf45 protein protein.
Length = 440
Score = 30.7 bits (66), Expect = 6.1
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Frame = +1
Query: 22 IKASGAEADSFETSISQALVEL-ETNSDLKAQLRELYITKAKEIE--LHNK-KSI-IIYV 186
+K E D+ + Q L E E + K +L + Y + E+E H K K I +I+
Sbjct: 85 LKKQDQEKDNMIEKLKQQLNETKEKAQEEKDKLEQKYTRQINELEGQFHQKAKEIGMIHT 144
Query: 187 PMPKLKAFQKIQIRLVRELE 246
+ ++ FQK +I++ REL+
Sbjct: 145 ELKAVRQFQKRKIQVERELD 164
>DQ679757-1|ABG74698.1| 1215|Homo sapiens intersectin 1 short form
variant 5 protein.
Length = 1215
Score = 30.3 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ679756-1|ABG74697.1| 1178|Homo sapiens intersectin 1 short form
variant 2 protein.
Length = 1178
Score = 30.3 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 552 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 608
>DQ679755-1|ABG74696.1| 1149|Homo sapiens intersectin 1 short form
variant 7 protein.
Length = 1149
Score = 30.3 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ679754-1|ABG74695.1| 1144|Homo sapiens intersectin 1 short form
variant 6 protein.
Length = 1144
Score = 30.3 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ386455-1|ABD72328.1| 1020|Homo sapiens intersectin 1 short form
transcript variant 8 protein.
Length = 1020
Score = 30.3 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ340865-1|ABC69037.1| 1076|Homo sapiens intersectin 1 short form
protein.
Length = 1076
Score = 30.3 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 587 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 643
>BX538175-1|CAD98050.1| 627|Homo sapiens hypothetical protein
protein.
Length = 627
Score = 30.3 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 444 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 500
>BC117560-1|AAI17561.1| 1144|Homo sapiens ITSN1 protein protein.
Length = 1144
Score = 30.3 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>BC116186-1|AAI16187.1| 1721|Homo sapiens intersectin 1 (SH3 domain
protein) protein.
Length = 1721
Score = 30.3 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>BC116185-1|AAI16186.1| 1716|Homo sapiens ITSN1 protein protein.
Length = 1716
Score = 30.3 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250kDa
protein.
Length = 2442
Score = 30.3 bits (65), Expect = 8.1
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Frame = +1
Query: 55 ETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQK--IQIR 228
+ + +A +EL + DLK + +E+ + + + EL +S++ ++PM + QK +Q
Sbjct: 1450 QREMQKAALEL-LSLDLKKRNQEVDLQQEQIQELEKCRSVLEHLPMAVQEREQKLTVQRE 1508
Query: 229 LVRELEKKLVVNM*SLLETVRSCLSPATKPVLLTNKRGHAQ 351
+RELEK ++LE L K ++ ++RG Q
Sbjct: 1509 QIRELEKDRETQR-NVLE--HQLLELEKKDQMIESQRGQVQ 1546
>AF114488-1|AAD29953.1| 1220|Homo sapiens intersectin short isoform
protein.
Length = 1220
Score = 30.3 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AF114487-1|AAD29952.1| 1721|Homo sapiens intersectin long isoform
protein.
Length = 1721
Score = 30.3 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AF064244-1|AAC78611.1| 1721|Homo sapiens intersectin long form
protein.
Length = 1721
Score = 30.3 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AF064243-1|AAC78610.1| 1220|Homo sapiens intersectin short form
protein.
Length = 1220
Score = 30.3 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 79 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associated
protein 1 protein.
Length = 2442
Score = 30.3 bits (65), Expect = 8.1
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Frame = +1
Query: 55 ETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQK--IQIR 228
+ + +A +EL + DLK + +E+ + + + EL +S++ ++PM + QK +Q
Sbjct: 1450 QREMQKAALEL-LSLDLKKRNQEVDLQQEQIQELEKCRSVLEHLPMAVQEREQKLTVQRE 1508
Query: 229 LVRELEKKLVVNM*SLLETVRSCLSPATKPVLLTNKRGHAQ 351
+RELEK ++LE L K ++ ++RG Q
Sbjct: 1509 QIRELEKDRETQR-NVLE--HQLLELEKKDQMIESQRGQVQ 1546
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,394,367
Number of Sequences: 237096
Number of extensions: 2398776
Number of successful extensions: 4645
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4639
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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