Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0422
(778 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 80 1e-15
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 80 1e-15
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 76 3e-14
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 71 9e-13
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 71 9e-13
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]... 29 4.5
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 29 4.5
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 29 4.5
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 28 6.0
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ... 28 7.9
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 80.2 bits (189), Expect = 1e-15
Identities = 40/81 (49%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 189
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KAF+KI +RLVRELEKK
Sbjct: 67 FRLRKAFRKIHLRLVRELEKK 87
Score = 44.4 bits (100), Expect = 9e-05
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
K+ SGK V+FV R+I+ P + V +RPR+RTLTSV++A+LE
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLE 128
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 80.2 bits (189), Expect = 1e-15
Identities = 40/81 (49%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 189
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KAF+KI +RLVRELEKK
Sbjct: 67 FRLRKAFRKIHLRLVRELEKK 87
Score = 44.4 bits (100), Expect = 9e-05
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
K+ SGK V+FV R+I+ P + V +RPR+RTLTSV++A+LE
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLE 128
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 75.8 bits (178), Expect = 3e-14
Identities = 40/81 (49%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 189
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KAF+KI RLVRELEKK
Sbjct: 67 FRLRKAFRKIHPRLVRELEKK 87
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
K+ SGK V+FV R+I+ P V +RPR+RTLTSV++A+LE
Sbjct: 86 KKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLE 128
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 70.9 bits (166), Expect = 9e-13
Identities = 34/81 (41%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 189
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KA++KI +RLVRELEKK
Sbjct: 67 YRLRKAYRKIHVRLVRELEKK 87
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
K+ SGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILD 128
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 70.9 bits (166), Expect = 9e-13
Identities = 34/81 (41%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 189
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KA++KI +RLVRELEKK
Sbjct: 67 YRLRKAYRKIHVRLVRELEKK 87
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/47 (48%), Positives = 33/47 (70%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 386
K+ SGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILD 128
>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P26969 Glycine dehydrogenase [decarboxylating],
mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
contains Pfam profile PF02347: Glycine cleavage system
P-protein
Length = 1044
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +2
Query: 350 KDIDLCVRCYPRGGARYPIRPIVSRITIHWPSFYNV 457
KD+ LC P G + + + WPSF N+
Sbjct: 570 KDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFTNM 605
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 335 KEATLKDIDLCVRCYPRGGARYPIRPIVSRITIHW 439
+E++LK CVRCYP G Y + + R+++ +
Sbjct: 180 RESSLKYQTRCVRCYP-NGTGYALSSVEGRVSMEF 213
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +1
Query: 55 ETSISQALVELETN-SDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRL 231
E + SQ + L++ +D+K QLR+ TK+KEI + +S++ + K+Q+R
Sbjct: 915 EEAKSQEIEALQSVLTDIKLQLRDTQETKSKEIS--DLQSVLTDI---------KLQLRD 963
Query: 232 VRELEKKLVVNM*SLLETVRSCLSPATKPVLLTN 333
+E + K + ++ S L+ ++ + +K + +TN
Sbjct: 964 TQETKSKEISDLQSALQDMQLEIEELSKGLEMTN 997
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 335 KEATLKDIDLCVRCYPRGGARYPIRPIVSRITIHW 439
+E++LK CVRCYP G Y + + R+ + +
Sbjct: 181 RESSLKYQTRCVRCYP-NGTGYALSSVEGRVAMEF 214
>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
Length = 482
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 350 KDIDLCVRCYPRGGARYPI 406
K++ LC RC+P G R+P+
Sbjct: 195 KELALCWRCFPSGWFRFPL 213
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,537,760
Number of Sequences: 28952
Number of extensions: 334104
Number of successful extensions: 877
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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