Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0417
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    25   2.5  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   3.3  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    25   4.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   5.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    24   5.8  
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    24   5.8  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    24   5.8  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   5.8  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    24   7.6  

>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 129 EMKFFNETSYEPIPIYPVMDNNGQII 206
           +MKF     + PIP+ P M N+G  +
Sbjct: 168 KMKFLIPKLHFPIPVPPAMKNHGNYV 193


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 138 FFNETSYEPIPIYPVMDNNGQIIDLNEEPNLDKAT 242
           +F  ++Y+ I     +DNN  ++DLN  PN + ++
Sbjct: 268 YFPNSTYQNI--LNSLDNNPAVLDLNGPPNQESSS 300


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 117 PYLSEMKFFNETSYEPIPIY 176
           P+L+++  F E SY  +PIY
Sbjct: 278 PHLADLILFCEKSYPSLPIY 297


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 93  PEFPGARAPYLSEMKFFNETSYEPIPIYP 179
           P  PG  AP L  +   + TS  P+P  P
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPP 421


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 153  SYEPIPIYP-VMDNNGQIIDLNEEPNLDKATLINM 254
            S +P+  Y  V DN+   +  ++EP +   T  NM
Sbjct: 1679 SQQPLTFYSNVADNSYMPVSASQEPKMGMGTAFNM 1713


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 27  GLLGFCRPVRGPKRHIMAVVR*PEFPGARAPYLSEMKFFNETSYE-PIPIYPVMDNNGQI 203
           G+  FC+ +R P+R I+     P F  ++ P    + +F E  ++ P+ I  ++ +    
Sbjct: 7   GIQAFCQTIRNPRR-IIPHATFPTF--SQIP--CNINYFLEQKFQVPVDIRALVLDKDNC 61

Query: 204 IDLNEEPNLDKATL 245
           I L  E  + +A L
Sbjct: 62  ITLPNETTIAEAEL 75


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 170 RNWFITSFVEEFHFTQVRCSCA 105
           +NW     +E+ +F  +RC CA
Sbjct: 122 KNWKKKVIIEDLNFLVLRCICA 143


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 14  NAFIRAARLLSTRTRPETAHNGG 82
           N+  R +R L   T PE+ HN G
Sbjct: 450 NSIARLSRALIYTTSPESIHNAG 472


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 135 SFHSSTVLLRQEIQA--ILPPPLCAVSGLVRVDKSLAARIKAFNLTK 1
           SF  +  ++R    A  ILPPPL   SG      SL  + K  + TK
Sbjct: 375 SFDENAQVMRYSANAREILPPPLNENSGSQSPSHSLLQKSKNTSSTK 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,494,650
Number of Sequences: 5004
Number of extensions: 27825
Number of successful extensions: 60
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)