Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0417
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421...    38   0.002
05_03_0620 - 16286207-16286342,16286861-16286955,16287051-162871...    27   3.9  
12_01_0161 - 1215892-1216026,1216393-1216462,1216623-1216786,121...    26   6.9  
11_01_0162 - 1330878-1331012,1331379-1331448,1331599-1331762,133...    26   6.9  
10_01_0145 - 1708597-1708824,1710225-1710468,1711217-1711263,171...    26   9.1  
07_03_1089 - 23879483-23881909                                         26   9.1  
01_05_0608 - 23628100-23631486                                         26   9.1  

>12_01_0535 +
           4208410-4208661,4209529-4209627,4210125-4210265,
           4210378-4210560,4210664-4210821,4210905-4211004,
           4211085-4211196,4211241-4211419,4211489-4211674,
           4211762-4211929
          Length = 525

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +2

Query: 263 MVQLSHMDKIIYESQRQGRISFYMTNY 343
           M  L  MD I +E+QRQGRISFY+T++
Sbjct: 177 MATLQVMDTIFFEAQRQGRISFYLTSH 203



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = +3

Query: 63  KRHIMAVVR*PEFPGARAPYLSEMKFFNETSYEPIPIYPVMDNNGQIIDLNEEPNLDKAT 242
           KR+++   +  +FPG +  +++EM F  E+  + I  Y V+D++G+ I  +    + K  
Sbjct: 110 KRNLVERKQAIDFPGGKVSFVAEMNFLPESQRDRINCYRVLDDDGRTISGSRFQEVSKEL 169

Query: 243 LINM 254
            + M
Sbjct: 170 ALKM 173


>05_03_0620 -
           16286207-16286342,16286861-16286955,16287051-16287158,
           16287262-16287357,16287446-16287604
          Length = 197

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 197 PVIIHNWINRNWFITSFVEEF 135
           P II NW+   WF   FVE +
Sbjct: 121 PPIIMNWMRLRWFKRKFVETY 141


>12_01_0161 -
           1215892-1216026,1216393-1216462,1216623-1216786,
           1217856-1217896,1218044-1218136,1218226-1218313,
           1218520-1218573,1218656-1218771,1218964-1219041,
           1219171-1219321,1219399-1219509
          Length = 366

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -1

Query: 63  SGLVRVDKSLAARIKAFNL 7
           SGLV++DKS+  R+KA +L
Sbjct: 266 SGLVQLDKSIEERVKAASL 284


>11_01_0162 -
           1330878-1331012,1331379-1331448,1331599-1331762,
           1332879-1332919,1333068-1333160,1333250-1333337,
           1333615-1333668,1333759-1333874,1334059-1334136,
           1334280-1334430,1334500-1334610
          Length = 366

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -1

Query: 63  SGLVRVDKSLAARIKAFNL 7
           SGLV++DKS+  R+KA +L
Sbjct: 266 SGLVQLDKSIEERVKAASL 284


>10_01_0145 -
           1708597-1708824,1710225-1710468,1711217-1711263,
           1711767-1711857,1712982-1713094,1713387-1713462,
           1713501-1713560,1713759-1713835,1714105-1714672,
           1715332-1715509,1715632-1715774,1717255-1717424,
           1717588-1717822,1718565-1718779
          Length = 814

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 312 CLCDSYIILSIWLSCTMVLTC*SA*PYPSS 223
           C   SYII+SI+     ++TC     +P S
Sbjct: 603 CFSSSYIIISIFRKFLAIITCICTCTHPQS 632


>07_03_1089 - 23879483-23881909
          Length = 808

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 129 HSSTVLLRQEIQAILPPPLCAVSGLVRVDKSLAARIKAFNL 7
           H  ++LLR+  +   P P C  S  +R  + L AR+   +L
Sbjct: 16  HQCSLLLRRLAERHSPAPTCPSSSFLRALRCLHARLLTADL 56


>01_05_0608 - 23628100-23631486
          Length = 1128

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 117 VLLRQEIQAILPPPLCAVSGLVRVDKS 37
           +L    I   +PP +C ++GL R+D S
Sbjct: 743 LLANNNITGSIPPSMCQLTGLKRLDLS 769


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,513,586
Number of Sequences: 37544
Number of extensions: 169001
Number of successful extensions: 323
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)