Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0417
         (345 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57290| Best HMM Match : E1_dh (HMM E-Value=1.4e-05)                 49   1e-06
SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)                 27   5.4  
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)         26   7.1  
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)                        26   7.1  

>SB_57290| Best HMM Match : E1_dh (HMM E-Value=1.4e-05)
          Length = 266

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = +2

Query: 263 MVQLSHMDKIIYESQRQGRISFYMTNY 343
           M  L+ MD+I+YESQRQGRISFYMTNY
Sbjct: 103 MTLLNTMDRILYESQRQGRISFYMTNY 129



 Score = 33.5 bits (73), Expect = 0.047
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 93  PEFPGA-RAPYLSEMKFFNETSYEPI-PIYPVMDNNGQIIDLNEEPNLDKATLINMS 257
           P +PGA    +  +++F +    + I P+Y VMD  G+II  + +P +   T + M+
Sbjct: 48  PRYPGAMNCSFTEKLEFVDPMDPQGIIPVYRVMDRQGKIIIDSHDPKVTYCTYLKMT 104


>SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)
          Length = 423

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 266 VQLSHMDKIIYESQRQGRISFYMTN 340
           +++ H+++I+Y+ QR G   F++TN
Sbjct: 376 LEVMHVNQIVYDLQRAGVPLFFVTN 400


>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
          Length = 1052

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 188 IHNWINRNWFITSFVEEFHFTQVRCSC 108
           + N  +R++F+T   +  +FT V C+C
Sbjct: 137 VKNSYSRDYFVTVHFDRGNFTSVDCTC 163


>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
          Length = 594

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 81  PPLCAVSGLVRVDKSLAARIKAFNLT 4
           PPLCAV   +RV    A R+  F+ T
Sbjct: 502 PPLCAVEACLRVLAVAALRLSRFSST 527


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,985,191
Number of Sequences: 59808
Number of extensions: 198097
Number of successful extensions: 438
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)