Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0417
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021480-5|CAJ21557.1|  432|Caenorhabditis elegans Hypothetical ...    50   3e-07
AL021480-4|CAA16329.2|  431|Caenorhabditis elegans Hypothetical ...    50   3e-07
Z99271-4|CAB16474.1|  105|Caenorhabditis elegans Hypothetical pr...    37   0.004
Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z99278-5|CAB16489.1|  290|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AF022388-1|AAC38956.1|  290|Caenorhabditis elegans putative tran...    27   3.6  
Z93388-6|CAB07663.1|  369|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z49909-2|CAB60994.1|  375|Caenorhabditis elegans Hypothetical pr...    26   8.3  
AF058329-1|AAD20727.1|  375|Caenorhabditis elegans unknown protein.    26   8.3  
AF045643-5|AAC02592.1|  607|Caenorhabditis elegans Hypothetical ...    26   8.3  
AF039051-5|AAB94265.2|  509|Caenorhabditis elegans Hypothetical ...    26   8.3  
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    26   8.3  

>AL021480-5|CAJ21557.1|  432|Caenorhabditis elegans Hypothetical
           protein Y39E4A.3b protein.
          Length = 432

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 21/29 (72%), Positives = 27/29 (93%)
 Frame = +2

Query: 257 KTMVQLSHMDKIIYESQRQGRISFYMTNY 343
           KTM QL+ MD+I+Y+SQRQGRISFYMT++
Sbjct: 91  KTMTQLNIMDRILYDSQRQGRISFYMTSF 119



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 111 RAPYLSEMKFFNETSYEPIPIYPVMDNNGQIIDLNEEPNLDKATLINMSK 260
           +A +  +++  N      +PIY V +  G +ID +++PN D+ T + M K
Sbjct: 42  KAAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYK 91


>AL021480-4|CAA16329.2|  431|Caenorhabditis elegans Hypothetical
           protein Y39E4A.3a protein.
          Length = 431

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 21/29 (72%), Positives = 27/29 (93%)
 Frame = +2

Query: 257 KTMVQLSHMDKIIYESQRQGRISFYMTNY 343
           KTM QL+ MD+I+Y+SQRQGRISFYMT++
Sbjct: 90  KTMTQLNIMDRILYDSQRQGRISFYMTSF 118



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 111 RAPYLSEMKFFNETSYEPIPIYPVMDNNGQIIDLNEEPNLDKATLINMSK 260
           +A +  +++  N      +PIY V +  G +ID +++PN D+ T + M K
Sbjct: 41  KAAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYK 90


>Z99271-4|CAB16474.1|  105|Caenorhabditis elegans Hypothetical
           protein Y43F4A.4 protein.
          Length = 105

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 114 APYLSEMKFFNETSYEPIPIYPVMDNNGQIIDLNEEPNLDKATLINMSK 260
           A +  +++  N      +PIY V +  G +ID +++PN D+ +L+ M K
Sbjct: 42  AAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQSLLKMYK 90



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 257 KTMVQLSHMDKIIYES 304
           KTM QL+ MD+I+Y+S
Sbjct: 90  KTMTQLNIMDRILYDS 105


>Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5b protein.
          Length = 276

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 102 PGARAPYLSEMKFFNETSYEPIPIYPVMDNNGQIIDLNEE 221
           P + +P L++   +  T   PIPIYP +  N Q+I L ++
Sbjct: 71  PCSPSPLLAQ---YTLTLAAPIPIYPPIPMNQQLISLQQQ 107


>Z99278-5|CAB16489.1|  290|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5a protein.
          Length = 290

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 102 PGARAPYLSEMKFFNETSYEPIPIYPVMDNNGQIIDLNEE 221
           P + +P L++   +  T   PIPIYP +  N Q+I L ++
Sbjct: 204 PCSPSPLLAQ---YTLTLAAPIPIYPPIPMNQQLISLQQQ 240


>AF022388-1|AAC38956.1|  290|Caenorhabditis elegans putative
           transcription factor MAB-3 protein.
          Length = 290

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 102 PGARAPYLSEMKFFNETSYEPIPIYPVMDNNGQIIDLNEE 221
           P + +P L++   +  T   PIPIYP +  N Q+I L ++
Sbjct: 204 PCSPSPLLAQ---YTLTLAAPIPIYPPIPMNQQLISLQQQ 240


>Z93388-6|CAB07663.1|  369|Caenorhabditis elegans Hypothetical
           protein T10C6.7 protein.
          Length = 369

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 206 DDLPVIIHNWINRNWFITSFVEEFHFTQV 120
           +D+  II++W N NW    F+E ++  Q+
Sbjct: 261 EDVTKIINHWRNGNWDNLKFIEIWNKVQL 289


>Z49909-2|CAB60994.1|  375|Caenorhabditis elegans Hypothetical
           protein C14A4.2 protein.
          Length = 375

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 135 KFFNETSYEPIPIYPVMDNNGQIIDLNEEPNLDKAT---LINMSKPWYN*AIW 284
           K  N  ++ P P+   MD  G+++ L  EP  + A+   +++ S P     +W
Sbjct: 45  KQLNMRNHLPAPLSKQMDTLGEVVTLIREPMAEVASCMRVVDKSLPALRLVLW 97


>AF058329-1|AAD20727.1|  375|Caenorhabditis elegans unknown protein.
          Length = 375

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 135 KFFNETSYEPIPIYPVMDNNGQIIDLNEEPNLDKAT---LINMSKPWYN*AIW 284
           K  N  ++ P P+   MD  G+++ L  EP  + A+   +++ S P     +W
Sbjct: 45  KQLNMRNHLPAPLSKQMDTLGEVVTLIREPMAEVASCMRVVDKSLPALRLVLW 97


>AF045643-5|AAC02592.1|  607|Caenorhabditis elegans Hypothetical
           protein F58H7.1 protein.
          Length = 607

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 35  RLLSTRTRPETAHN 76
           RL+ TR RPE AHN
Sbjct: 125 RLVKTRPRPEAAHN 138


>AF039051-5|AAB94265.2|  509|Caenorhabditis elegans Hypothetical
           protein C14C6.7 protein.
          Length = 509

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 102 PGARAPYLSEMKFFNETSYEPIPIYPVMD 188
           PGA+  +++  K  NET   P+PI P +D
Sbjct: 191 PGAK--FITVSKSLNETLEYPVPIVPRLD 217


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 117 PYLSEMKFFNETSYEPIPIYPVMD 188
           P+ S +K  +E + + IP+YP+M+
Sbjct: 42  PFYSNVKKIHEKTDKQIPMYPIMN 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,178,311
Number of Sequences: 27780
Number of extensions: 153538
Number of successful extensions: 346
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)