Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0417
(345 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putativ... 44 3e-05
At5g09300.2 68418.m01077 2-oxoisovalerate dehydrogenase, putativ... 42 1e-04
At5g09300.1 68418.m01078 2-oxoisovalerate dehydrogenase, putativ... 42 1e-04
At3g47920.1 68416.m05225 hypothetical protein similar to zinc fi... 31 0.16
At2g17920.1 68415.m02075 expressed protein similar to zinc finge... 28 1.9
At4g02000.1 68417.m00269 expressed protein low similarity to zin... 27 2.5
At2g42950.1 68415.m05324 expressed protein 27 3.4
At1g25170.1 68414.m03125 expressed protein nearly identical to A... 27 3.4
At1g25097.1 68414.m03119 expressed protein nearly identical to A... 27 3.4
At1g24996.1 68414.m03115 expressed protein nearly identical to A... 27 3.4
At1g24822.1 68414.m03109 expressed protein nearly identical to A... 27 3.4
At5g35040.1 68418.m04139 hypothetical protein includes At2g24900... 26 7.7
>At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putative /
3-methyl-2-oxobutanoate dehydrogenase, putative /
branched-chain alpha-keto acid dehydrogenase E1 alpha
subunit, putative similar to branched-chain alpha-keto
acid dehydrogenase E1-alpha subunit [Gallus gallus]
GI:12964598; contains Pfam profile PF00676:
Dehydrogenase E1 component
Length = 472
Score = 44.0 bits (99), Expect = 3e-05
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +3
Query: 96 EFPGARAPYLSEMKFFNETSYEPIPIYPVMDNNGQII 206
+FPG + Y SEMKF E+S IP Y V+D +G+II
Sbjct: 81 DFPGGKVGYTSEMKFIPESSSRRIPCYRVLDEDGRII 117
Score = 39.1 bits (87), Expect = 8e-04
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 263 MVQLSHMDKIIYESQRQGRISFYMTN 340
M L MD I YE+QRQGRISFY+T+
Sbjct: 137 MATLQVMDHIFYEAQRQGRISFYLTS 162
>At5g09300.2 68418.m01077 2-oxoisovalerate dehydrogenase, putative /
3-methyl-2-oxobutanoate dehydrogenase, putative /
branched-chain alpha-keto acid dehydrogenase E1 alpha
subunit, putative similar to branched-chain alpha-keto
acid dehydrogenase E1-alpha subunit [Gallus gallus]
GI:12964598; contains Pfam profile PF00676:
Dehydrogenase E1 component
Length = 401
Score = 41.9 bits (94), Expect = 1e-04
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +3
Query: 96 EFPGARAPYLSEMKFFNETSYEPIPIYPVMDNNGQII 206
+FPG + + E++F +E+ E +P Y V+D+NGQ+I
Sbjct: 10 DFPGGKVAFTPEIQFISESDKERVPCYRVLDDNGQLI 46
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 263 MVQLSHMDKIIYESQRQGRISFYMT 337
MV L MD I YE+QRQGR+SFY T
Sbjct: 66 MVTLQIMDNIFYEAQRQGRLSFYAT 90
>At5g09300.1 68418.m01078 2-oxoisovalerate dehydrogenase, putative /
3-methyl-2-oxobutanoate dehydrogenase, putative /
branched-chain alpha-keto acid dehydrogenase E1 alpha
subunit, putative similar to branched-chain alpha-keto
acid dehydrogenase E1-alpha subunit [Gallus gallus]
GI:12964598; contains Pfam profile PF00676:
Dehydrogenase E1 component
Length = 472
Score = 41.9 bits (94), Expect = 1e-04
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +3
Query: 96 EFPGARAPYLSEMKFFNETSYEPIPIYPVMDNNGQII 206
+FPG + + E++F +E+ E +P Y V+D+NGQ+I
Sbjct: 81 DFPGGKVAFTPEIQFISESDKERVPCYRVLDDNGQLI 117
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 263 MVQLSHMDKIIYESQRQGRISFYMT 337
MV L MD I YE+QRQGR+SFY T
Sbjct: 137 MVTLQIMDNIFYEAQRQGRLSFYAT 161
>At3g47920.1 68416.m05225 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 300
Score = 31.5 bits (68), Expect = 0.16
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 137 FHFTQVRCSCARKFRLSYHRHYVPFR---ASYGSTKA 36
F + ++R C+ FR+++HR+Y P+R +YG +A
Sbjct: 125 FQYERLRRICSSCFRVTHHRNYCPYRPRLPNYGRERA 161
>At2g17920.1 68415.m02075 expressed protein similar to zinc finger
protein [Arabidopsis thaliana] GI:976277
Length = 307
Score = 27.9 bits (59), Expect = 1.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 137 FHFTQVRCSCARKFRLSYHRHYVPFR 60
F + ++R C+ FR +++R+Y P+R
Sbjct: 196 FQYERLRRICSNCFRFTHNRNYCPYR 221
>At4g02000.1 68417.m00269 expressed protein low similarity to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 314
Score = 27.5 bits (58), Expect = 2.5
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 137 FHFTQVRCSCARKFRLSYHRHYVPFR 60
F + ++R C+ FR+++HR+ P+R
Sbjct: 116 FQYERLRRICSSCFRMTHHRNSCPYR 141
>At2g42950.1 68415.m05324 expressed protein
Length = 501
Score = 27.1 bits (57), Expect = 3.4
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = -2
Query: 218 FI*VDDLPVIIHNWINRNWFITS 150
FI DD+P+++ +W +N+ +T+
Sbjct: 188 FIQEDDIPIVLRSWQAQNFLVTA 210
>At1g25170.1 68414.m03125 expressed protein nearly identical to
At1g24996, At1g25097, At1g24822
Length = 216
Score = 27.1 bits (57), Expect = 3.4
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 162 PIPIYPVMDNNGQIIDLNEEPNLDKATLINMS-KPWYN*AIWIKLYMNH 305
P+ + P + N Q +DL E N D A ++ S + W N A W LY NH
Sbjct: 4 PVVVAPAI--NLQHMDL-PEGNEDVAAVLQTSTQRWLNAAEWSILYNNH 49
>At1g25097.1 68414.m03119 expressed protein nearly identical to
At1g24996, At1g25170, At1g24822; similar to ESTs dbj
AV530941.1, dbj|AV530975.1, gb|BE037999.1,
gb|BE037993.1, gb|AI995009.1, gb|AI099531.1,
gb|N37906.1, gb|T76894.1
Length = 216
Score = 27.1 bits (57), Expect = 3.4
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 162 PIPIYPVMDNNGQIIDLNEEPNLDKATLINMS-KPWYN*AIWIKLYMNH 305
P+ + P + N Q +DL E N D A ++ S + W N A W LY NH
Sbjct: 4 PVVVAPAI--NLQHMDL-PEGNEDVAAVLQTSTQRWLNAAEWSILYNNH 49
>At1g24996.1 68414.m03115 expressed protein nearly identical to
At1g25170, At1g25097, At1g24822; similar to ESTs dbj
AV530941.1, dbj|AV530975.1, gb|BE037999.1,
gb|BE037993.1, gb|AI995009.1, gb|AI099531.1,
gb|N37906.1, gb|T76894.1
Length = 149
Score = 27.1 bits (57), Expect = 3.4
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 162 PIPIYPVMDNNGQIIDLNEEPNLDKATLINMS-KPWYN*AIWIKLYMNH 305
P+ + P + N Q +DL E N D A ++ S + W N A W LY NH
Sbjct: 4 PVVVAPAI--NLQHMDL-PEGNEDVAAVLQTSTQRWLNAAEWSILYNNH 49
>At1g24822.1 68414.m03109 expressed protein nearly identical to
At1g24996, At1g25170, At1g25097; similar to ESTs dbj
AV530941.1, dbj|AV530975.1, gb|BE037999.1,
gb|BE037993.1, gb|AI995009.1, gb|AI099531.1,
gb|N37906.1, gb|T76894.1
Length = 216
Score = 27.1 bits (57), Expect = 3.4
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 162 PIPIYPVMDNNGQIIDLNEEPNLDKATLINMS-KPWYN*AIWIKLYMNH 305
P+ + P + N Q +DL E N D A ++ S + W N A W LY NH
Sbjct: 4 PVVVAPAI--NLQHMDL-PEGNEDVAAVLQTSTQRWLNAAEWSILYNNH 49
>At5g35040.1 68418.m04139 hypothetical protein includes At2g24900,
At5g35040, At3g30500, At4g07690
Length = 236
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +3
Query: 156 YEPIPIYPVMDNNGQIIDLNEEPNLDKATLINM 254
Y P P + + N+ +I D+ +PN+++ + M
Sbjct: 201 YHPCPNHVKIQNHARISDVTVDPNIEEVQELKM 233
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,704,744
Number of Sequences: 28952
Number of extensions: 140815
Number of successful extensions: 312
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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