Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0414
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.8  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 7   YKAFTILKKEPYYTYEIMLHAKKINLKINLLAF 105
           +K F  LKK PY+  E  L+ + +N   N+ AF
Sbjct: 463 FKKFASLKKSPYFK-EANLNTRMLN--DNVFAF 492


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 7   YKAFTILKKEPYYTYEIMLHAKKINLKINLLAF 105
           +K F  LKK PY+  E  L+ + +N   N+ AF
Sbjct: 463 FKKFASLKKSPYFK-EANLNTRMLN--DNVFAF 492


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 128 NYFPQKNNNYDYFVIKIKNENY 193
           NY    NNNY+ +  K+  +NY
Sbjct: 329 NYNNYNNNNYNNYNKKLYYKNY 350


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 449 YTATVLFN*TNWITYWVK 502
           Y  T L    +W+++W+K
Sbjct: 252 YIPTCLIVIMSWVSFWIK 269



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 485 ITYWVKFGDY 514
           +TYW+ F +Y
Sbjct: 418 VTYWIMFAEY 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,913
Number of Sequences: 438
Number of extensions: 4524
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)