Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0410
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    79   1e-13
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    36   0.70 
UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 78.6 bits (185), Expect = 1e-13
 Identities = 35/35 (100%), Positives = 35/35 (100%)
 Frame = -2

Query: 163  ERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR 59
            ERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR
Sbjct: 952  ERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR 986



 Score = 33.9 bits (74), Expect = 3.7
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = -1

Query: 506 CIAYRMIRGQCSEELFTII 450
           CI YRM  G+CSEELF +I
Sbjct: 881 CILYRMFHGECSEELFEMI 899


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep:
          Like moricin - Manduca sexta (Tobacco hawkmoth)
          (Tobacco hornworm)
          Length = 248

 Score = 36.3 bits (80), Expect = 0.70
 Identities = 17/23 (73%), Positives = 17/23 (73%)
 Frame = -3

Query: 69 MGDGNHSLSGGPCARLPTRAIKK 1
          MGDGNHS SG P A LPTRA  K
Sbjct: 1  MGDGNHSPSGRPYASLPTRAKMK 23


>UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 85

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 30  RTAHLIVSGYRRPWTSAMPGAEPS-RCLPLNTLH 128
           +T +L+   +R  WTS +PGA+P  RCL +N  H
Sbjct: 36  QTIYLVDDNHRHSWTSTIPGAQPDHRCL-VNLRH 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 712,906,907
Number of Sequences: 1657284
Number of extensions: 14659448
Number of successful extensions: 32151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32145
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)