Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0410
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   2.5  
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    26   4.4  
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    26   4.4  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    25   7.8  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    25   7.8  

>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 196 VPSRNLTYICYERYDMSFFKRGLWRVL 116
           +PS    ++C  RY  S   RG WR +
Sbjct: 345 IPSNRRLFLCIWRYLQSLQSRGCWRTV 371


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = -3

Query: 504 YCVPYDSWAVFRGAIYD-NPVIPIFPAPP 421
           +C P D W   RG +Y+    +P  P  P
Sbjct: 80  HCSPDDCWMAIRGKVYNVTAYLPYHPVGP 108


>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 211 HVLMVVPSRNLTYICYERYDMSF 143
           H+L VVP   +T++ YE+  M F
Sbjct: 247 HLLRVVPQTCITFLVYEQVGMHF 269


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +1

Query: 415 DGGWCWKNGDDGIIVNSSSEHCPRII---RYAIHWSRNSYVDP 534
           D GW W      +I+N S     R++   + + H   NS +DP
Sbjct: 140 DAGWIWLLDAKAVIMNPSESLKDRVLKPEKLSQHLLLNSPIDP 182


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 528 YVGITAPVYCVPYDSWAVFRGAIYDNPV 445
           ++G TAP+  + +DS  ++ G+ YDN V
Sbjct: 532 FIGHTAPISSLQFDSNHLYSGS-YDNSV 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,253
Number of Sequences: 5004
Number of extensions: 60233
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)