Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0410
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)         29   3.5  
SB_24909| Best HMM Match : Mab-21 (HMM E-Value=3.4e-06)                28   6.2  

>SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)
          Length = 878

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 275 SVTKVDPTRDFRFMYVVKQRQPRSHGCSITK 183
           SV ++  ++DF F +V+K  Q RS  C IT+
Sbjct: 385 SVKRLFVSQDFGFTWVLKDEQVRSFFCQITR 415


>SB_24909| Best HMM Match : Mab-21 (HMM E-Value=3.4e-06)
          Length = 702

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 305 RPCPPAFQKEPKELVEVKHRM 367
           RPC P +Q+ P+  V   HR+
Sbjct: 678 RPCQPCYQRNPRGAVHENHRL 698


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,220,352
Number of Sequences: 59808
Number of extensions: 467673
Number of successful extensions: 910
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)