Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0410
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF351187-1|AAK37558.1| 1629|Drosophila melanogaster furry protei...    29   7.9  
AF310159-1|AAG41424.1| 3479|Drosophila melanogaster fry protein.       29   7.9  
AE014296-1705|ABI31247.1| 1629|Drosophila melanogaster CG32045-P...    29   7.9  
AE014296-1700|AAF50228.2| 3479|Drosophila melanogaster CG32045-P...    29   7.9  

>AF351187-1|AAK37558.1| 1629|Drosophila melanogaster furry protein
           short isoform protein.
          Length = 1629

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 457 VNSSSEHC-PRIIRYAIHWSRNSYVDPEVQNDI 552
           + S +EHC P ++   + W R    D E++ND+
Sbjct: 331 LGSVAEHCLPSLLHTLLAWHRRQLSDMEIKNDL 363


>AF310159-1|AAG41424.1| 3479|Drosophila melanogaster fry protein.
          Length = 3479

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 457 VNSSSEHC-PRIIRYAIHWSRNSYVDPEVQNDI 552
           + S +EHC P ++   + W R    D E++ND+
Sbjct: 331 LGSVAEHCLPSLLHTLLAWHRRQLSDMEIKNDL 363


>AE014296-1705|ABI31247.1| 1629|Drosophila melanogaster CG32045-PD,
           isoform D protein.
          Length = 1629

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 457 VNSSSEHC-PRIIRYAIHWSRNSYVDPEVQNDI 552
           + S +EHC P ++   + W R    D E++ND+
Sbjct: 331 LGSVAEHCLPSLLHTLLAWHRRQLSDMEIKNDL 363


>AE014296-1700|AAF50228.2| 3479|Drosophila melanogaster CG32045-PB,
           isoform B protein.
          Length = 3479

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 457 VNSSSEHC-PRIIRYAIHWSRNSYVDPEVQNDI 552
           + S +EHC P ++   + W R    D E++ND+
Sbjct: 331 LGSVAEHCLPSLLHTLLAWHRRQLSDMEIKNDL 363


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,306,542
Number of Sequences: 53049
Number of extensions: 699187
Number of successful extensions: 1338
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)