Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0410
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPas...    28   5.4  
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical
           protein K11D9.2b protein.
          Length = 1004

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
 Frame = +3

Query: 30  RTAHLIVSGYRRPWTSAMP------------GAEPSRCLPLNTLHKPRLKKDMS*RS*HM 173
           R  H+ V+G + P TSAM             G +  RCL L T+  P    +M+      
Sbjct: 525 RCTHVRVNGQKVPLTSAMTQKIVDQCVQYGTGRDTLRCLALGTIDTPVSVSNMNLEDSTQ 584

Query: 174 YVKFRDGTTMRTWLSLFNYIHKSEVSRRVYFCN 272
           +VK+    T    + + +   ++EVS  +  CN
Sbjct: 585 FVKYEQDITFVGVVGMLD-PPRTEVSDSIKACN 616


>Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical
           protein K11D9.2a protein.
          Length = 1059

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
 Frame = +3

Query: 30  RTAHLIVSGYRRPWTSAMP------------GAEPSRCLPLNTLHKPRLKKDMS*RS*HM 173
           R  H+ V+G + P TSAM             G +  RCL L T+  P    +M+      
Sbjct: 525 RCTHVRVNGQKVPLTSAMTQKIVDQCVQYGTGRDTLRCLALGTIDTPVSVSNMNLEDSTQ 584

Query: 174 YVKFRDGTTMRTWLSLFNYIHKSEVSRRVYFCN 272
           +VK+    T    + + +   ++EVS  +  CN
Sbjct: 585 FVKYEQDITFVGVVGMLD-PPRTEVSDSIKACN 616


>AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1059

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
 Frame = +3

Query: 30  RTAHLIVSGYRRPWTSAMP------------GAEPSRCLPLNTLHKPRLKKDMS*RS*HM 173
           R  H+ V+G + P TSAM             G +  RCL L T+  P    +M+      
Sbjct: 525 RCTHVRVNGQKVPLTSAMTQKIVDQCVQYGTGRDTLRCLALGTIDTPVSVSNMNLEDSTQ 584

Query: 174 YVKFRDGTTMRTWLSLFNYIHKSEVSRRVYFCN 272
           +VK+    T    + + +   ++EVS  +  CN
Sbjct: 585 FVKYEQDITFVGVVGMLD-PPRTEVSDSIKACN 616


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +3

Query: 24  DERTAHLIVSGYRRPWTSAMPGAEPSRCLPLNTLHKP 134
           D RT      G R P  S +PG E    +P N  H P
Sbjct: 118 DRRTPPRRSPGRRSPPRSRLPGPERRDVMPFNPRHSP 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,429,609
Number of Sequences: 27780
Number of extensions: 351351
Number of successful extensions: 811
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)