Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0410
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.68 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.3  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 412 CDGGWCWKNGDDGIIVNSSSEHCPRII 492
           CD  W    G D I+ N++  H PRII
Sbjct: 120 CDRLWGVDTGVDDILGNNTVIHQPRII 146


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 665 MFTYTPVIKICLIIYFY*QCYRH 597
           +FT++  I + LIIY+Y Q   H
Sbjct: 215 IFTFSYCIPMILIIYYYSQIVSH 237


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 38  PPDSEWLPSPMDFSNARG 91
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 459 YDNPVIPIFPAPP-TITVQFML 397
           YDN V P F  PP T+ V  M+
Sbjct: 17  YDNSVRPDFGGPPATVEVDIMV 38


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 14  LVGRRAHGPPDSEWLP 61
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 32  HGPPDSEWLPSPMDFSNARG 91
           H P +  WLP  + ++NA G
Sbjct: 96  HVPSEHIWLPDIVLYNNADG 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,013
Number of Sequences: 438
Number of extensions: 4304
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)