Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0410
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine deacet...    28   5.0  
At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine deacet...    28   5.0  
At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine deacet...    28   5.0  
At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine deacet...    28   5.0  
At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine deacet...    28   5.0  
At4g01810.1 68417.m00238 protein transport protein-related relat...    27   8.8  

>At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine
           deacetylase family protein contains Pfam domain PF03331:
           UDP-3-O-acyl N-acetylglycosamine deacetylase
          Length = 955

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 226 LNNDNHVLMVVPSRNLTYICYERYDMSFFKRGLWRVL 116
           +N ++ +L +V +RN++   YE YD+   +   WRVL
Sbjct: 688 INRNHKILRMVQTRNVSVYRYEIYDL---RSNSWRVL 721


>At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine
           deacetylase family protein / F-box protein-related
           contains weak hit to TIGRFAM TIGR01640 : F-box protein
           interaction domain and  weak hit to  Pfam PF00646: F-box
           domain;
          Length = 925

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 226 LNNDNHVLMVVPSRNLTYICYERYDMSFFKRGLWRVL 116
           +N ++ +L +V +RN++   YE YD+   +   WRVL
Sbjct: 658 INRNHKILRMVQTRNVSVYRYEIYDL---RSNSWRVL 691


>At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine
           deacetylase family protein contains Pfam domain PF03331:
           UDP-3-O-acyl N-acetylglycosamine deacetylase
          Length = 949

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 226 LNNDNHVLMVVPSRNLTYICYERYDMSFFKRGLWRVL 116
           +N ++ +L +V +RN++   YE YD+   +   WRVL
Sbjct: 682 INRNHKILRMVQTRNVSVYRYEIYDL---RSNSWRVL 715


>At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine
           deacetylase family protein / F-box protein-related
           contains weak hit to TIGRFAM TIGR01640 : F-box protein
           interaction domain and  weak hit to  Pfam PF00646: F-box
           domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
           gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
           gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
           dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
          Length = 905

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 226 LNNDNHVLMVVPSRNLTYICYERYDMSFFKRGLWRVL 116
           +N ++ +L +V +RN++   YE YD+   +   WRVL
Sbjct: 638 INRNHKILRMVQTRNVSVYRYEIYDL---RSNSWRVL 671


>At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine
           deacetylase family protein / F-box protein-related
           contains weak hit to TIGRFAM TIGR01640 : F-box protein
           interaction domain and  weak hit to  Pfam PF00646: F-box
           domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
           gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
           gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
           dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
          Length = 925

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 226 LNNDNHVLMVVPSRNLTYICYERYDMSFFKRGLWRVL 116
           +N ++ +L +V +RN++   YE YD+   +   WRVL
Sbjct: 658 INRNHKILRMVQTRNVSVYRYEIYDL---RSNSWRVL 691


>At4g01810.1 68417.m00238 protein transport protein-related related
           to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
          Length = 880

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 3   FLLPL*ADERTAHLIVSGYRRPWTSAMPGAEPSRCL 110
           +L P+ A  + AH I S  R P+T  +P A   RCL
Sbjct: 361 YLSPMHASLKVAHEIFSSLR-PYTLNVPEASRDRCL 395


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,425,853
Number of Sequences: 28952
Number of extensions: 328333
Number of successful extensions: 714
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)