Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0409
         (707 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RB33 Cluster: F-box domain, putative; n=1; Plasmodium...    33   6.9  

>UniRef50_Q7RB33 Cluster: F-box domain, putative; n=1; Plasmodium
           yoelii yoelii|Rep: F-box domain, putative - Plasmodium
           yoelii yoelii
          Length = 573

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = +2

Query: 440 VRN*YMNVYKKRNYLTVKVEI*RTSNSPVDRFA-QAVWSLIMFMTSIGK*HCGEWRNFYF 616
           VRN    ++K   YLT   +I   S S VD F  + ++     +TSI   +C +  N + 
Sbjct: 434 VRN--STIFKIPRYLTGLRKIKIASLSNVDNFCIREIFKYCKNLTSIDFSNCWKVNNSFC 491

Query: 617 HA*RELLGVLSYFSVFFFLCLCARKVGIRL 706
           +     +    YF+++FFLC+  ++  + L
Sbjct: 492 NVNGLEIASGKYFNIYFFLCIIKKETKVFL 521


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,107,492
Number of Sequences: 1657284
Number of extensions: 12404227
Number of successful extensions: 24081
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 23407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24077
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)