Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0409
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_53313| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_42759| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 203 EIIMLILNAQRSGRSLY*YYK--EERFVCLFVSNRLRKYWTDLKNSFSIRSRH 51
           E+I++ L  +  G+ LY  Y   E + +   +  RLR+ W   +   ++ SRH
Sbjct: 250 EVILIELFGENEGKLLYKAYSSSEWKAIASLLHERLRQRWESRQEDSALLSRH 302


>SB_53313| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 286 LSTCIFLMDTKFQVNRMHGSVVITEHP*KPCRFI 387
           LSTCIFL+   +  N+     VI +H   P  FI
Sbjct: 5   LSTCIFLLGLGYVANQPGPDTVIAKHSFGPITFI 38


>SB_42759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -2

Query: 625 LCVEIKVSPFSTMLFPYRSHKHDERPDRLRETVHRRIRSTLN 500
           L V+  ++ F ++L   +  K D+  DRL E++H  +R+++N
Sbjct: 155 LWVQADITEFESVLSKLK--KIDDEQDRLIESIHPSVRTSMN 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,777,148
Number of Sequences: 59808
Number of extensions: 385722
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)