Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0409
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z66563-1|CAA91468.1|  306|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical protein
            ZK337.1c protein.
          Length = 1516

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 252  GSNTHINISLSIKYMYFLDGYQVSSQSDAWFSSYNGTSV 368
            G +TH +  ++I+    L  YQ+SS +DA   + NGT V
Sbjct: 1287 GKHTH-SFDINIRNAIVLQSYQLSSLNDAVSINANGTGV 1324


>Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical protein
            ZK337.1b protein.
          Length = 1501

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 252  GSNTHINISLSIKYMYFLDGYQVSSQSDAWFSSYNGTSV 368
            G +TH +  ++I+    L  YQ+SS +DA   + NGT V
Sbjct: 1290 GKHTH-SFDINIRNAIVLQSYQLSSLNDAVSINANGTGV 1327


>Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical protein
            ZK337.1a protein.
          Length = 1508

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 252  GSNTHINISLSIKYMYFLDGYQVSSQSDAWFSSYNGTSV 368
            G +TH +  ++I+    L  YQ+SS +DA   + NGT V
Sbjct: 1279 GKHTH-SFDINIRNAIVLQSYQLSSLNDAVSINANGTGV 1316


>Z66563-1|CAA91468.1|  306|Caenorhabditis elegans Hypothetical
           protein F46C3.2 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 632 LLGVLSYFSVFF--FLCLCARKVGIRL 706
           L+G+L YF+V+   FLC C     +RL
Sbjct: 189 LIGMLLYFNVYMVGFLCCCENNFSMRL 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,306,881
Number of Sequences: 27780
Number of extensions: 310344
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)