Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0407
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    28   1.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   1.2  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    27   1.5  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    25   6.2  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   6.2  

>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 282  HNHENLLIYLNFPFHSYYLFKIRAIMERNRSMPPMNTN 395
            +++ N + YLN P +  YLF+  +++  N  +  +N N
Sbjct: 1119 NSNRNNVFYLNIPGNECYLFEAPSVLAMNEWIHSLNFN 1156


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -2

Query: 551  IYLAIIMILWFFLVS*PDLLVASKRH**LICNTFKNNEAICVKKENFKIFS 399
            I +  + I+ FFL + P++ V  +     +C+ F N+E + +K+ +  + S
Sbjct: 1751 IKIGALQIISFFLKNVPEITVQHQTEMLKMCSLFGNSEDVMIKQLSIYVMS 1801


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 464 LIINGVSKQQVNQARTQEKTTKSLLLRDIFINFF 565
           L +  V+K+Q N+   Q +  K  + RD F NFF
Sbjct: 257 LTVRTVTKKQRNKNTKQTRVVKVSVPRDSFFNFF 290


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 294 NLLIYLNFPFHSYYLFKIRAIMERNRSMPPMNTNLTKNFE 413
           N ++  N P  SY++ KI    E  R  P +  +   +FE
Sbjct: 56  NAVLEFNIPSESYHIMKITVFHEGFRKHPHLIGDTVLSFE 95


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 475 WRFEATSKS-G*DTRKNHKIIIIARYIYQLFS 567
           W   +T+ S   +TR   +I+ I RYIY  F+
Sbjct: 121 WSIFSTAPSEASETRNKQRILAILRYIYSCFT 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,494
Number of Sequences: 5004
Number of extensions: 43746
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)