Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0407
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7730| Best HMM Match : SUA5 (HMM E-Value=1.6)                       30   1.6  
SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_7730| Best HMM Match : SUA5 (HMM E-Value=1.6)
          Length = 325

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 416 FPFSRKSLHYF*KYYKLIINGVSKQQVNQARTQEKTTKSLLLRDIFINF--FRLNSF 580
           +P+S+    Y  ++Y L++N   ++++   +   ++T S    D+ + F  F  NSF
Sbjct: 199 YPWSQPQYLYSSRWYSLVVNATFEEKLTGRKASGESTISFFSSDVKLEFPSFNPNSF 255


>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 219 KELNVHVNCAHCMRIFTIHTQHNHEN 296
           + LN H   AH  R    HTQH H +
Sbjct: 36  RSLNTHTQHAHSTRSLNTHTQHAHSD 61



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 219 KELNVHVNCAHCMRIFTIHTQHNHEN 296
           + LN H   AH  R    HTQH H +
Sbjct: 223 RSLNTHTQHAHSTRSLNTHTQHAHSD 248



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 225 LNVHVNCAHCMRIFTIHTQHNH 290
           LN+H   AH  R    HTQH H
Sbjct: 25  LNMHTQHAHSTRSLNTHTQHAH 46



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 225 LNVHVNCAHCMRIFTIHTQHNH 290
           LN+H   AH  R    HTQH H
Sbjct: 212 LNMHTQHAHSTRSLNTHTQHAH 233


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +3

Query: 141 HTSLLFSLVKIYKRN*LNLIDTLFHYKELNVHVNCAHCMRIFTIHTQHNHENLLIYLNFP 320
           H SLLF +  +   N +  +  LFH   L   +   H + +F       H +LL ++N+ 
Sbjct: 83  HVSLLFHVSSLCHVNYVYHVIWLFHVSLLCHVIYMYHVIWLF-------HVSLLCHVNYM 135

Query: 321 FHSYYLFKI 347
           +H  +LF +
Sbjct: 136 YHVIWLFHV 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,771,212
Number of Sequences: 59808
Number of extensions: 264739
Number of successful extensions: 488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)