Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0407
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U80839-14|AAB37920.1|  151|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
            protein F52C12.4 protein.
          Length = 1635

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 132  KHTHTSLLFSLVKIYKRN*LNLIDTLFHYKELNVHVNCAHCMRIFTIHTQHNHENLLIYL 311
            K TH  + ++L+   +R  L+L   LF +     H+ C     +F + TQH+   L +Y 
Sbjct: 1497 KTTHPVVFWNLIYYLRR--LSLPSHLFSWIAERHHIRC-----VFDLPTQHDETRLPLYF 1549

Query: 312  NFPFH 326
              P H
Sbjct: 1550 YNPNH 1554


>Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical
           protein ZK909.5 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 300 LIYLNFPFHSYYLFKIRAIMERNRSMPPMNTNLTKNFEIFLF-HANRFIIF 449
           L+    PF S + +KI  ++ +N  +    T+ +KNF+  L  +A R ++F
Sbjct: 185 LVLFGDPFTSSH-YKIEDVLIQNSKITLQMTSFSKNFDTLLINNARRILVF 234


>U80839-14|AAB37920.1|  151|Caenorhabditis elegans Hypothetical
           protein ZC204.14 protein.
          Length = 151

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 318 PFHSYYLFKIRAIMERNRSMPPMNTNL-TKNFEIFLFHANRFIIFK 452
           PF + Y     + ++  RS PP + +L +K  ++F+FH N+  +F+
Sbjct: 45  PFSNRYASNRSSQVKPIRSDPPDSEDLRSKEHQVFMFHLNQDTMFQ 90


>Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical
           protein W07A12.6 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 268 QYILN-TITKIC*YTSIFHSIATIYLKSGQLWN 363
           +YI++  +TKI   +S+F +IATIY    + WN
Sbjct: 326 KYIMSDALTKIVFRSSLFVAIATIYAILPEYWN 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,832,952
Number of Sequences: 27780
Number of extensions: 233822
Number of successful extensions: 548
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)