Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0407
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.7  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   8.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 327 SYYLFKIRAIMERNRSMPPM 386
           S+ L+K+  I+ERN   PP+
Sbjct: 147 SHTLYKLDEIIERNGDKPPL 166


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 522 PQNHYYCEIYL 554
           PQN YY E YL
Sbjct: 410 PQNFYYIEEYL 420


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +2

Query: 254 YENIYNTYSTQSRKFVNIPQFSIP 325
           Y N  N Y       +NI Q  +P
Sbjct: 324 YNNYNNNYKPLYYNIINIEQIPVP 347


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 260 NIYNTYSTQSRKFVNIPQFSIP 325
           N YN Y       +NI Q  +P
Sbjct: 344 NNYNNYKKLYYNIINIEQIPVP 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,015
Number of Sequences: 438
Number of extensions: 3115
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)