Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0407
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42060.1 68415.m05201 CHP-rich zinc finger protein, putative        29   3.0  
At3g57380.1 68416.m06387 expressed protein contains Pfam domain,...    28   5.3  
At4g17580.1 68417.m02628 Bax inhibitor-1 family protein / BI-1 f...    27   9.2  

>At2g42060.1 68415.m05201 CHP-rich zinc finger protein, putative 
          Length = 268

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 222 ELNVHVNCAHCMRIFTIHTQHNHENLLIYLNFPFHSYYLF 341
           + ++HV CAH  ++    +   H  LL+Y + P  S+  F
Sbjct: 108 DFDLHVQCAHLPQVLVHESHPMHSLLLVYNSTPPMSFTQF 147


>At3g57380.1 68416.m06387 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 504

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +3

Query: 276 TQHNHENLLIYLNFPFHSYYLFKIRAIMERNRSMPPMNTNLTKNFEIF 419
           T H+    ++++   +HS+++ K   I+ +    PP++ N  K    F
Sbjct: 211 TSHHFNKKVVFVIVEYHSWWIMKYGDIVSQLSDYPPVDFNGDKRTHCF 258


>At4g17580.1 68417.m02628 Bax inhibitor-1 family protein / BI-1
           family protein similar to SP|Q9LD45 Bax inhibitor-1
           (BI-1) (AtBI-1) {Arabidopsis thaliana}; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 247

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 415 FSFFTQIASLFLKVLQIN 468
           F+FFT  ASLF+++L +N
Sbjct: 216 FTFFTDFASLFVQILVLN 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,517,466
Number of Sequences: 28952
Number of extensions: 191525
Number of successful extensions: 350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)