Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0406
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    28   0.97 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   1.7  
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    27   2.2  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   3.0  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   5.2  

>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 314 KSIFLHALNVINTKNINERELLIHLPVVRRLLSLHGKLPLPCIFLKG 454
           KS     + ++N    ++ E++  +PV+RR L    K  +  I  KG
Sbjct: 47  KSTISKQIKILNKNGFSQEEIMTFIPVIRRNLLESAKTLVKIIVQKG 93


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 320 IFLHALNVINTKNINERELL--IHLPVVRRLLSL 415
           +F HAL ++  K IN+RELL     P+   LL L
Sbjct: 870 LFDHALLIVKPKTINKRELLKVFQRPIPLLLLQL 903


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +2

Query: 104 DLHLLQMTEFINTLRI*FPNISFM 175
           +LH+L   +F++TL + FP+I+F+
Sbjct: 109 NLHMLFGIDFVSTLVVSFPHITFL 132


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 314 KSIFLHALNVINTKNINERELLIHLPVVRRLLSLHGKLPLPC 439
           K+ +  A N I T  INE  L  HLP +   L+   K+ L C
Sbjct: 250 KTDYPAACNAIETLLINEAVLSSHLPKIAETLT-EAKVTLKC 290


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 367 KGTSNS-FTGGKTSFESAWEITTALYIFERRSCCTATTETLRTLVSR 504
           K  SN  F   K  FE    +T  + +    SC   TTE LR+++ R
Sbjct: 333 KALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCLLMTTEILRSMLYR 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,174
Number of Sequences: 5004
Number of extensions: 39934
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)