Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0406
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3537| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.76 
SB_52198| Best HMM Match : Folate_rec (HMM E-Value=0)                  30   1.3  
SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_58122| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)                     27   7.1  
SB_56024| Best HMM Match : DUF755 (HMM E-Value=4.2)                    27   7.1  
SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)                 27   9.4  

>SB_3537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = +1

Query: 250 KRMNIFKLKLNVVFVAYLPYRKVYIFARIKCNKYEKYQRKGTSNSFTG--GKTSFES-AW 420
           KR++ F  K++V++ A   YRK      I+ N    Y +KG++  F G   K S ++  W
Sbjct: 6   KRLDAFTNKVSVLWRARTKYRK------IRTNSARHYAQKGSAVQFKGITLKVSDDNQTW 59

Query: 421 EITTALY 441
           +I++ LY
Sbjct: 60  QISSILY 66


>SB_52198| Best HMM Match : Folate_rec (HMM E-Value=0)
          Length = 583

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +1

Query: 280 NVVFVAYLPYRKVYIFARIKCNKYEKYQRKGTSNSFTGGKTSFESAWEITTALYIFERRS 459
           N +  A    R +  FA + C          T  S +  KTS  S  ++ +A  +++  S
Sbjct: 243 NSITTATKMQRVLLAFAVVACIAIGTQGLTKTCLSTSTAKTSPSSNSDVFSACQVYQNNS 302

Query: 460 CCTAT-TETLRTLVSRWG 510
           CC+AT T+ L + V   G
Sbjct: 303 CCSATFTQQLSSPVKGVG 320


>SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 328 ARIKCNKYEKYQRKGTSNSFTGGKTSFESAWEITTALYIFER---RSCCTATTETLRTLV 498
           A+ K ++Y   Q K  S +F  GKT  E   +  T + +F+R   R+  +   + +R + 
Sbjct: 40  AKDKWSQYTGEQSKAISEAFKEGKTCVEIKNKDATLVVMFDRMVQRNAMSGWEKRVRCMP 99

Query: 499 SRW 507
           S W
Sbjct: 100 SGW 102


>SB_58122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 314 KSIFLHALNVINTKNINERELLIHLPVVRRLLS 412
           KS F+  L ++     NE+E L + P V RLL+
Sbjct: 2   KSTFIKQLKIVYDDGFNEKERLEYRPQVYRLLA 34


>SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1744

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 307 YRKVYIFARIKCNKYEKYQRKGTSNSFTGGKTS 405
           Y ++ +F+R+   K E+  +KGT   FTG K S
Sbjct: 338 YAQMLLFSRLSFRKAEESVQKGTPFYFTGCKWS 370


>SB_14105| Best HMM Match : G-alpha (HMM E-Value=0)
          Length = 320

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 314 KSIFLHALNVINTKNINERELLIHLPVVRRLLS 412
           KS F+  L ++     NE+E L + P V RLL+
Sbjct: 53  KSTFIKQLKIVYDDGFNEKERLEYRPQVYRLLA 85


>SB_56024| Best HMM Match : DUF755 (HMM E-Value=4.2)
          Length = 113

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 142 RVYKLGHL*KMQIICKCLQILLYPEIG*LSERKLNTVPKL 23
           R  K   L + +   KC++ L+YPEI    ++K NTV ++
Sbjct: 58  RTTKTATLKQQRKTLKCVRQLIYPEILTTHQKKSNTVNRI 97


>SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)
          Length = 330

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 56  QLTDFWIKKYLEAFTNDLHLLQMTE 130
           +LT  W KK  E F ND H     E
Sbjct: 277 ELTQIWAKKIEERFLNDAHTASRNE 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,052,767
Number of Sequences: 59808
Number of extensions: 259601
Number of successful extensions: 513
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)