Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0406
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-2|AAO38633.1|  512|Caenorhabditis elegans Aldehyde dehy...    29   2.0  
AF016672-1|AAB66116.3|  563|Caenorhabditis elegans Aldehyde dehy...    29   2.0  
Z81533-1|CAB04334.1|  329|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>AF016672-2|AAO38633.1|  512|Caenorhabditis elegans Aldehyde
           dehydrogenase protein6, isoform b protein.
          Length = 512

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = +1

Query: 196 WAPKIILESVYLLISSIHKRMNIFKLKLNVVFVAYLPYRKVYIFARIKCNKYEKYQRKGT 375
           +APK I   +   IS+IHK + +  ++   VF++ +   K   FAR+K   Y  + + G 
Sbjct: 355 YAPKSIWPKILEKISAIHKEIKLGDVRDGSVFLSAVIDDKA--FARLKA--YIDFAKTGA 410

Query: 376 --SNSFTGGKTSFESAWEITTAL 438
             +N   GGK   ++ + I   L
Sbjct: 411 DGANVVLGGKCDDKTGYFIEPTL 433


>AF016672-1|AAB66116.3|  563|Caenorhabditis elegans Aldehyde
           dehydrogenase protein6, isoform a protein.
          Length = 563

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = +1

Query: 196 WAPKIILESVYLLISSIHKRMNIFKLKLNVVFVAYLPYRKVYIFARIKCNKYEKYQRKGT 375
           +APK I   +   IS+IHK + +  ++   VF++ +   K   FAR+K   Y  + + G 
Sbjct: 355 YAPKSIWPKILEKISAIHKEIKLGDVRDGSVFLSAVIDDKA--FARLKA--YIDFAKTGA 410

Query: 376 --SNSFTGGKTSFESAWEITTAL 438
             +N   GGK   ++ + I   L
Sbjct: 411 DGANVVLGGKCDDKTGYFIEPTL 433


>Z81533-1|CAB04334.1|  329|Caenorhabditis elegans Hypothetical
           protein F36G9.2 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 102 MICIFYR*PSL*TRYGFSFLTFHLWT 179
           + CI YR P+      FS +  HLWT
Sbjct: 36  LYCIIYRTPNSMKTVKFSLINLHLWT 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,835,624
Number of Sequences: 27780
Number of extensions: 209139
Number of successful extensions: 402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)