Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0404
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   1.7  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   5.2  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    25   6.8  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    24   9.0  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    24   9.0  

>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 75  WKIHFNYNTRKRRSSCKLTSASVRRDFLNKELETRHGQLSTI 200
           W +  N+N   R+   KL S     D L ++L  R G+ +T+
Sbjct: 547 WVVKSNFNNNLRKLHEKLQSLFASYDKLQEDLSKRLGKKATL 588


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 60  LVGDFWKIHFNYNTRKRRSSCKLTSASVRRD 152
           L   F K+   YNT+ +R S   ++ +V+RD
Sbjct: 623 LKDSFTKLDIQYNTKYKRISRNRSTKNVKRD 653


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 75  WKIHFNYNTRKRRSSCKLTSASVRRDFLNKE---LETRHGQLST 197
           W    NY+     SS +LT A   R FLN +   LE ++ ++ T
Sbjct: 15  WFYLSNYDLYDETSSMELTGAQSWRRFLNYDNNALEAKYNEIIT 58


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 337 SQYFCEFCDTKCKIKPL 287
           S+   EFC+T CK +P+
Sbjct: 222 SEDLLEFCETPCKSQPI 238


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 279 PTPAQSIKSSPH*NRFR 229
           PTPA  +K+SPH   +R
Sbjct: 330 PTPAPPVKTSPHPASYR 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,372
Number of Sequences: 5004
Number of extensions: 28261
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)