Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0404
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0473 - 34181212-34181430,34181512-34181735,34181812-341819...    31   0.31 
11_01_0459 + 3546101-3548771,3548871-3549238                           29   1.7  
01_05_0189 + 19075411-19075497,19075603-19075682,19076707-190768...    29   1.7  
04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976...    28   2.9  
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186...    27   5.1  
11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389           27   8.8  
06_01_0882 + 6759378-6759707,6759837-6760488,6760609-6760673,676...    27   8.8  

>03_06_0473 -
           34181212-34181430,34181512-34181735,34181812-34181973,
           34182071-34182167
          Length = 233

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 4   PPVARPPGLG*VRFFGSK--RSLAIFGKYILTTTLG 105
           PPVARPPG G   F      R + I G +I  T +G
Sbjct: 15  PPVARPPGSGHAHFLAGAGVRGVEIAGNFIKFTAIG 50


>11_01_0459 + 3546101-3548771,3548871-3549238
          Length = 1012

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -3

Query: 373 IEDKKSRFAFNESQYFCEFCDTKCKIKPLNRPDS 272
           ++ +++  ++N+S YFC +    C++K  +RP S
Sbjct: 45  LDPQQALMSWNDSTYFCSWEGVLCRVKTPHRPIS 78


>01_05_0189 +
           19075411-19075497,19075603-19075682,19076707-19076851,
           19077259-19078116,19078664-19078724,19082571-19082680
          Length = 446

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 45  FWLKTLVGDFWKIHF-NYNTRKRRSSCKLTSASVRRDFLNKELETRHG 185
           +WL+ + G+  K+     NT   R+  + TSAS++    + +LET  G
Sbjct: 35  WWLERVEGEEGKVRVVGSNTTTSRAGRRFTSASIKTRHASGDLETEDG 82


>04_04_0808 -
           28196563-28196735,28197369-28197440,28197540-28197666,
           28198362-28198430,28198517-28198583,28198751-28198872,
           28199302-28199412,28199596-28199661,28200156-28200213,
           28200307-28200343,28200420-28200513,28200967-28201032,
           28201139-28201203,28201352-28201496,28201925-28202074,
           28202266-28202335,28202752-28202828,28202919-28202987,
           28203798-28203881,28204018-28204061,28204172-28204273,
           28204420-28204618,28204672-28204727,28204886-28204958,
           28205685-28205771,28205863-28205976,28206985-28207092,
           28207183-28207278,28207722-28207787,28208130-28208222,
           28208429-28208512,28208961-28209078,28209191-28209267,
           28209459-28209641,28210542-28210636,28210903-28211053,
           28212218-28212325,28212513-28212612,28212788-28212840,
           28214022-28214102
          Length = 1269

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 314 TEFTKILTFIKSEPRFFIFYLKKKPLVLCVGVEFFKIFI 430
           T F K  TF+   P   +F     P +LC+G+  FK+ I
Sbjct: 280 TFFRKHGTFVAKHPLLVLFVSLLVPTLLCIGLIRFKVEI 318


>10_08_0015 +
           14116129-14116691,14116810-14117128,14117588-14118664,
           14118754-14119056
          Length = 753

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 285 IGPTPAQSIKSSPH*NRFRKNRLL*FQLESSRAGRDAFRVLYSKNRD 145
           +GP    SI+  P    FR++ LL  ++ S+R   D   ++YSK  D
Sbjct: 122 LGPKRDLSIQKGPKDRLFRRSALLYTRILSNREKYDRDWLVYSKELD 168


>11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389
          Length = 1024

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = -3

Query: 373 IEDKKSRFAFNESQYFCEFCDTKCKIKPLNR 281
           ++ +++  ++N+S YFC +    C++K  +R
Sbjct: 45  MDPQQALMSWNDSNYFCSWEGVSCRVKTPHR 75


>06_01_0882 +
           6759378-6759707,6759837-6760488,6760609-6760673,
           6761363-6761440,6761523-6761633,6761739-6761783,
           6762200-6762373,6762841-6763797
          Length = 803

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 167 TRNASRPALDDSSWNYNKRFFLN 235
           TR++  PA+++ +W++ K F LN
Sbjct: 258 TRSSPIPAVEEETWDFKKYFDLN 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,134,773
Number of Sequences: 37544
Number of extensions: 175075
Number of successful extensions: 359
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)