Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0404
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_21145| Best HMM Match : MucBP (HMM E-Value=7.4)                     27   5.2  

>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 220  TIFSKSILMWRAFDRLRRSRADLKV*FCISYHRIHKNIDFH*KRTE 357
            T+  +   +W+  D L+     L    C   H IH NI  H +  E
Sbjct: 879  TVEEQDARLWKTLDLLKNKGLTLNKENCEGAHNIHDNIILHGRTVE 924


>SB_21145| Best HMM Match : MucBP (HMM E-Value=7.4)
          Length = 203

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 128 HKRVSTSRFFE*RTRNASRPALDDSSWNYNKRF 226
           HKR+ST    +     A+ PALD+S +NY   +
Sbjct: 108 HKRLSTLSSDKETFDQAAPPALDESGYNYTVHY 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,567,594
Number of Sequences: 59808
Number of extensions: 198944
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)