Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0404
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82285-4|CAD56247.1|  392|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z82285-3|CAD56246.1|  573|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z82285-4|CAD56247.1|  392|Caenorhabditis elegans Hypothetical
           protein T28F3.4b protein.
          Length = 392

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +3

Query: 42  IFWLKTLVGDFWKIHFNYNTRKRRSSCKLTSASVRRDFLNKELETRHGQLSTILV 206
           IF+  ++V   W + +      + S CK+ +    RD+L+  +  R  + +  LV
Sbjct: 241 IFYFASIVSTIWSVCWFLTASNQPSKCKVMT-KTERDYLDANVVRRSNKTNRSLV 294


>Z82285-3|CAD56246.1|  573|Caenorhabditis elegans Hypothetical
           protein T28F3.4a protein.
          Length = 573

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +3

Query: 42  IFWLKTLVGDFWKIHFNYNTRKRRSSCKLTSASVRRDFLNKELETRHGQLSTILV 206
           IF+  ++V   W + +      + S CK+ +    RD+L+  +  R  + +  LV
Sbjct: 241 IFYFASIVSTIWSVCWFLTASNQPSKCKVMT-KTERDYLDANVVRRSNKTNRSLV 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,941,316
Number of Sequences: 27780
Number of extensions: 161064
Number of successful extensions: 388
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)