Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0404
         (441 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g42470.1 68414.m04897 patched family protein similar to SP|O1...    29   1.8  
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin...    27   5.6  

>At1g42470.1 68414.m04897 patched family protein similar to SP|O15118
            Niemann-Pick C1 protein precursor from Homo sapiens
            (GB:AAB63982) (GI:2276463); contains Pfam profile PF02460
            Patched family
          Length = 1272

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +2

Query: 191  LDDSSWNYNKRFFLNRF*CGELLIDCAGVGPI*RFNFAFRITEFTKILTFIKSEPR 358
            +D++SW    RF   R  CG LL D  G  P     F  R   FT +L  + S  +
Sbjct: 1190 IDETSWGDCARFLKIRSLCGVLLQDVFGTSP---SRFLTRPCIFTGVLEHVWSSSK 1242


>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
           (CCCH type) family protein contains Pfam domains
           PF00013: KH domain and PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 240

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 22  PGLG*VRFFGSKRSLAIFGKYILTTTLGKGGLPASSQARQYVAIF*IKNSKR 177
           PG G V  FG+  S       +    +GKGG+ +    R+  A   IK+ +R
Sbjct: 103 PGSGPVSIFGASTSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHER 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,280,490
Number of Sequences: 28952
Number of extensions: 145920
Number of successful extensions: 331
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)