Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0399
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    81   7e-17
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   1.6  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   1.6  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.1  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   3.6  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   6.3  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   6.3  
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    25   6.3  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 81.4 bits (192), Expect = 7e-17
 Identities = 34/58 (58%), Positives = 45/58 (77%)
 Frame = +1

Query: 265 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQ 438
           KK+I+++VP P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV  K+
Sbjct: 57  KKAIVVFVPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVTQKR 114


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 410 LGLGRILRSPTKTTCLPLNFFSSSRTS 330
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 241 FCNVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTACFDDLRTHRSNVIN 92
           FC+V +P++      GF    RL D+ + GI  ++  +    TH + +IN
Sbjct: 416 FCDVGVPEIS-----GFAHISRLSDKKVAGISPNSGPYKVDSTHEARIIN 460


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 280 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 372
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = -3

Query: 462 MSLERGLLLFVSNTSFVAGLRQDLTVSNKDYMFTTELLFELTDKPDLNLLKGLQ 301
           +S E  L+ F +N + ++    D+T S++ ++  +  L+   DK   ++L+G Q
Sbjct: 690 LSTESLLIKFYTNQNKISA---DVTASDRHFLLPSNRLYTYNDKQLESILRGSQ 740


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = -3

Query: 444 LLLFVSNTSFVAGLRQDLTVSN 379
           ++LF+S TSF++G+ Q + ++N
Sbjct: 377 MILFISCTSFISGILQLVLLNN 398


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 92  YCNYVSRPLLNRFNTIFSN 36
           Y N++ +P+L  F+TI SN
Sbjct: 326 YTNWIQKPILGIFDTIRSN 344


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 376 FVGDRKILPKPSHKTRVANKQKEATLKGHLTSVLP 480
           +V  R    KP H +   +  ++   K H +SVLP
Sbjct: 45  YVSSRVSPKKPQHNSDATSSAQKVANKTHTSSVLP 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,651
Number of Sequences: 5004
Number of extensions: 35138
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)