Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0399
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694...    65   3e-11
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644...    65   3e-11
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679     56   2e-08
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168     29   1.6  
10_08_0368 + 17241156-17241308,17243745-17243993,17244104-172442...    29   2.7  
11_06_0764 + 27108979-27110018,27110176-27112270                       28   3.6  
03_02_0488 - 8824980-8825267,8825364-8827775                           28   3.6  
04_04_1644 + 35015849-35016838                                         28   4.7  

>05_03_0610 -
           16167557-16167679,16168236-16168418,16169291-16169414,
           16169514-16169626,16169668-16169742
          Length = 205

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 32/67 (47%), Positives = 42/67 (62%)
 Frame = +1

Query: 262 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 441
           N+K++IIYVP    KA++KI +RLVRELEKKFSGK VV V  R+I+  P   + V   + 
Sbjct: 70  NRKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVVRPRT 129

Query: 442 EATLKGH 462
                 H
Sbjct: 130 RTLTAVH 136


>03_02_0683 +
           10363963-10364037,10364112-10364185,10364312-10364435,
           10365047-10365229,10365478-10365600
          Length = 192

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 32/64 (50%), Positives = 44/64 (68%)
 Frame = +1

Query: 262 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 441
           N+K+++I+VP    KAF+KI +RLVRELEKKFSGK VV V  R+I+ +P  K     + +
Sbjct: 57  NRKAVVIHVPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIV-RPPKKGSAVQRPR 115

Query: 442 EATL 453
             TL
Sbjct: 116 TRTL 119


>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
          Length = 129

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 30/64 (46%), Positives = 42/64 (65%)
 Frame = +1

Query: 262 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 441
           N K ++I+V     KAF+KI +RLV+ELEKKFSGK VVF   R+I+ +P +K    +  +
Sbjct: 42  NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-RPLNKGSAVHHPR 100

Query: 442 EATL 453
             TL
Sbjct: 101 TRTL 104


>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
          Length = 336

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 440 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 324
           F L A+  L L L  +L   T   CLPL FF+ +  SL+
Sbjct: 4   FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42


>10_08_0368 +
           17241156-17241308,17243745-17243993,17244104-17244206,
           17244291-17244390,17244556-17244666,17245302-17245407,
           17245550-17245640,17245951-17246092,17246370-17246517,
           17246597-17246706,17247131-17247287,17247439-17247564,
           17247646-17247786
          Length = 578

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = -3

Query: 471 RGQMSLERGLLLFVSNTSFVAGLRQDLTVSNKDYMFTTELLFELTDKPDLNLLKGLQFR 295
           RG + LE  LL      +FV     D    NK  M T   +FE+  KPD N L    F+
Sbjct: 224 RGSLYLELNLLYLEVRDAFVDYWIND----NKITMDTASQIFEILRKPDYNYLTQEDFK 278


>11_06_0764 + 27108979-27110018,27110176-27112270
          Length = 1044

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 298 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKEATLKGHLTSVL 477
           K+KAFQ   + L   + K      +  VG    +  PS+K R  + Q   +  G+ T  L
Sbjct: 574 KVKAFQVHDMVLEYIMSKSIEENFITVVGGHWQMTAPSNKVRRLSLQSSGSKHGNSTKGL 633

Query: 478 PIA 486
            +A
Sbjct: 634 NLA 636


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 128 KASGAEADSFETSISQALVELETNSDL 208
           ++SG   + FET +S A++E+E N+ L
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASL 331


>04_04_1644 + 35015849-35016838
          Length = 329

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 223 PKLGFEVGVGFEFDQRLRDRGLEGIRLSTACFDDLRTHR 107
           P L FE+ +  +FDQR+     E ++L      DL  HR
Sbjct: 134 PALAFEINLS-DFDQRVHRHAAESVQLLAEHGVDLAAHR 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,729,031
Number of Sequences: 37544
Number of extensions: 218670
Number of successful extensions: 519
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)