Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0399
         (494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)               89   2e-18
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)                   29   2.8  
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)                       28   4.9  
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)           27   6.4  
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)                     27   8.5  
SB_18246| Best HMM Match : SRF-TF (HMM E-Value=3.3)                    27   8.5  
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                27   8.5  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 42/67 (62%), Positives = 54/67 (80%)
 Frame = +1

Query: 265 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKE 444
           KK+III+VP+P+++AFQKIQ RLVRELEKKFSGKHVV V  R+ILP+P+ K+R    QK+
Sbjct: 59  KKAIIIFVPVPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR---NQKQ 115

Query: 445 ATLKGHL 465
              + HL
Sbjct: 116 KRPRSHL 122



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 33/50 (66%), Positives = 39/50 (78%)
 Frame = +2

Query: 107 TMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEID 256
           T S KI+K  G  A+ FE  ISQA++ELE NSD+KAQLRELYI+ AKEID
Sbjct: 6   TASAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEID 55


>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
          Length = 237

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 435 FVSNTSFVAGLRQDLTVSNKDYMFTTE 355
           F+ N SFV+ +  DLT S+ D+ + TE
Sbjct: 40  FIPNLSFVSAVLWDLTKSSSDFQWHTE 66


>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
          Length = 513

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 405 LRQDLTVSNKDYMFTTELLFELTDKPDLNLLKGLQFRHRHIDDDRLL 265
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216


>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
          Length = 151

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +1

Query: 286 VPMPKLKAFQKIQIRLVRELEKKFSG 363
           VP+P++ A QK++ +L R++E+K +G
Sbjct: 69  VPLPQVSAMQKVKGKL-RDMEQKLNG 93


>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2735

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 385  DRKILPKPSHKTRVANKQKEATLKGHLTSVLPIAIP 492
            D +I  K  H     NKQ EAT+K       P+A P
Sbjct: 1037 DIRIGDKNDHDPVFQNKQYEATIKEDFEGFAPLAFP 1072


>SB_18246| Best HMM Match : SRF-TF (HMM E-Value=3.3)
          Length = 598

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
 Frame = +1

Query: 319 IQIRLVRELEKKFSGKH--------VVFVGDRKILPKPSH---KTRVANKQKEATLKGHL 465
           +++R++   EKK   KH        V+F  +RK+L K SH   + +V   Q+   L  H 
Sbjct: 143 VEVRVIFTKEKKLLTKHSHDLLEVQVIFTQERKLLTKHSHDLLEVQVIFTQERKLLTKHS 202

Query: 466 TSVLPIAI 489
             +L + +
Sbjct: 203 HDLLEVQV 210


>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 493

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 405 LRQDLTVSNKDYMFTTELLFELTDKPDLNLLKGLQFRHRHIDDDRLL 265
           LRQ L  SN        +L  L  K D+   K      +H+ DD LL
Sbjct: 40  LRQRLNSSNPGISNPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,616,966
Number of Sequences: 59808
Number of extensions: 244638
Number of successful extensions: 680
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)