Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0399
(494 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7 prot... 99 1e-20
M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein. 99 1e-20
BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7 pr... 99 1e-20
BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7 pr... 99 1e-20
BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7 pr... 99 1e-20
AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein. 99 1e-20
X13482-1|CAA31838.1| 255|Homo sapiens protein ( Human mRNA for ... 31 2.9
BC071717-1|AAH71717.1| 255|Homo sapiens small nuclear ribonucle... 31 2.9
BC022816-1|AAH22816.1| 255|Homo sapiens small nuclear ribonucle... 31 2.9
AL078621-9|CAB81646.1| 255|Homo sapiens protein ( G islands. ).). 31 2.9
AK223070-1|BAD96790.1| 255|Homo sapiens small nuclear ribonucle... 31 2.9
AK223110-1|BAD96830.1| 255|Homo sapiens small nuclear ribonucle... 29 6.7
>Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 98.7 bits (235), Expect = 1e-20
Identities = 43/59 (72%), Positives = 54/59 (91%)
Frame = +1
Query: 265 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 441
+K+III+VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQK
Sbjct: 57 RKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQK 115
Score = 67.3 bits (157), Expect = 3e-11
Identities = 33/48 (68%), Positives = 39/48 (81%)
Frame = +2
Query: 113 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEID 256
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEI+
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIE 52
>M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein.
Length = 192
Score = 98.7 bits (235), Expect = 1e-20
Identities = 43/59 (72%), Positives = 54/59 (91%)
Frame = +1
Query: 265 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 441
+K+III+VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQK
Sbjct: 55 RKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQK 113
Score = 67.3 bits (157), Expect = 3e-11
Identities = 33/48 (68%), Positives = 39/48 (81%)
Frame = +2
Query: 113 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEID 256
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEI+
Sbjct: 3 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIE 50
>BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 98.7 bits (235), Expect = 1e-20
Identities = 43/59 (72%), Positives = 54/59 (91%)
Frame = +1
Query: 265 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 441
+K+III+VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQK
Sbjct: 57 RKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQK 115
Score = 67.3 bits (157), Expect = 3e-11
Identities = 33/48 (68%), Positives = 39/48 (81%)
Frame = +2
Query: 113 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEID 256
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEI+
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIE 52
>BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 98.7 bits (235), Expect = 1e-20
Identities = 43/59 (72%), Positives = 54/59 (91%)
Frame = +1
Query: 265 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 441
+K+III+VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQK
Sbjct: 57 RKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQK 115
Score = 67.3 bits (157), Expect = 3e-11
Identities = 33/48 (68%), Positives = 39/48 (81%)
Frame = +2
Query: 113 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEID 256
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEI+
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIE 52
>BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 98.7 bits (235), Expect = 1e-20
Identities = 43/59 (72%), Positives = 54/59 (91%)
Frame = +1
Query: 265 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 441
+K+III+VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQK
Sbjct: 57 RKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQK 115
Score = 67.3 bits (157), Expect = 3e-11
Identities = 33/48 (68%), Positives = 39/48 (81%)
Frame = +2
Query: 113 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEID 256
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEI+
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIE 52
>AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein.
Length = 194
Score = 98.7 bits (235), Expect = 1e-20
Identities = 43/59 (72%), Positives = 54/59 (91%)
Frame = +1
Query: 265 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 441
+K+III+VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQK
Sbjct: 57 RKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQK 115
Score = 67.3 bits (157), Expect = 3e-11
Identities = 33/48 (68%), Positives = 39/48 (81%)
Frame = +2
Query: 113 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEID 256
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEI+
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIE 52
>X13482-1|CAA31838.1| 255|Homo sapiens protein ( Human mRNA for U2
snRNP-specific A' protein. ).
Length = 255
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 247 RN*LHNKKSIIIYV----PMPKLKAFQKIQIRLVRELEKKFSGK 366
RN + NKK +YV P ++ FQK++++ +E EK F GK
Sbjct: 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGK 165
>BC071717-1|AAH71717.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' protein.
Length = 255
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 247 RN*LHNKKSIIIYV----PMPKLKAFQKIQIRLVRELEKKFSGK 366
RN + NKK +YV P ++ FQK++++ +E EK F GK
Sbjct: 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGK 165
>BC022816-1|AAH22816.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' protein.
Length = 255
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 247 RN*LHNKKSIIIYV----PMPKLKAFQKIQIRLVRELEKKFSGK 366
RN + NKK +YV P ++ FQK++++ +E EK F GK
Sbjct: 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGK 165
>AL078621-9|CAB81646.1| 255|Homo sapiens protein ( G islands. ).).
Length = 255
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 247 RN*LHNKKSIIIYV----PMPKLKAFQKIQIRLVRELEKKFSGK 366
RN + NKK +YV P ++ FQK++++ +E EK F GK
Sbjct: 122 RNLVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGK 165
>AK223070-1|BAD96790.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' variant protein.
Length = 255
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 247 RN*LHNKKSIIIYV----PMPKLKAFQKIQIRLVRELEKKFSGK 366
RN + NKK +YV P ++ FQK++++ +E EK F GK
Sbjct: 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGK 165
>AK223110-1|BAD96830.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' variant protein.
Length = 255
Score = 29.5 bits (63), Expect = 6.7
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 247 RN*LHNKKSIIIYV----PMPKLKAFQKIQIRLVRELEKKFSGK 366
RN + NKK +YV P ++ FQ+++++ +E EK F GK
Sbjct: 122 RNPVTNKKHYRLYVIYKVPQVRVLDFQRVKLKERQEAEKMFKGK 165
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,984,477
Number of Sequences: 237096
Number of extensions: 1181579
Number of successful extensions: 2325
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2325
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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