Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0399
(494 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 74 7e-14
U64842-9|AAB37081.2| 458|Caenorhabditis elegans Hypothetical pr... 28 3.2
AJ288951-1|CAB97346.1| 458|Caenorhabditis elegans Pellino prote... 28 3.2
Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z82266-1|CAB05178.2| 626|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical pr... 27 9.9
U80029-13|AAB37592.2| 429|Caenorhabditis elegans Hypothetical p... 27 9.9
AL034393-8|CAA22313.1| 241|Caenorhabditis elegans Hypothetical ... 27 9.9
AC006762-8|AAP31426.1| 295|Caenorhabditis elegans Hypothetical ... 27 9.9
AC006762-7|AAF60555.1| 375|Caenorhabditis elegans Hypothetical ... 27 9.9
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 73.7 bits (173), Expect = 7e-14
Identities = 35/73 (47%), Positives = 50/73 (68%)
Frame = +1
Query: 256 LHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANK 435
L NK +IIIYVP+P+LKAF KI LVRELEKKF G+ ++ + R+ILPKP ++ +
Sbjct: 53 LGNKSAIIIYVPVPQLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQ 112
Query: 436 QKEATLKGHLTSV 474
+++ LT+V
Sbjct: 113 KQKRPRSRTLTAV 125
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +2
Query: 119 KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEID 256
K++K+ G E +SQAL++LETN D+++QL+ELYI KE++
Sbjct: 7 KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVE 52
>U64842-9|AAB37081.2| 458|Caenorhabditis elegans Hypothetical
protein F25B4.2 protein.
Length = 458
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/62 (20%), Positives = 31/62 (50%)
Frame = +2
Query: 80 RNCNIYYIGTMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIDY 259
+ C ++ + T TK+ K SF + ++++V +E +D + ++ +ID+
Sbjct: 65 KKCTVHNVSTSDTKLTKDKARHTVSFHSDSNKSVV-IEYAADPSKDMFQIGRASDDQIDF 123
Query: 260 TI 265
T+
Sbjct: 124 TV 125
>AJ288951-1|CAB97346.1| 458|Caenorhabditis elegans Pellino protein
protein.
Length = 458
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/62 (20%), Positives = 31/62 (50%)
Frame = +2
Query: 80 RNCNIYYIGTMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIDY 259
+ C ++ + T TK+ K SF + ++++V +E +D + ++ +ID+
Sbjct: 65 KKCTVHNVSTSDTKLTKDKARHTVSFHSDSNKSVV-IEYAADPSKDMFQIGRASDDQIDF 123
Query: 260 TI 265
T+
Sbjct: 124 TV 125
>Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical
protein F45H11.3 protein.
Length = 738
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2
Query: 205 VGVGFEFDQRLRDRGLEGIRLSTACFDDL 119
V VGFE RLRD+GL +LS +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550
>Z82266-1|CAB05178.2| 626|Caenorhabditis elegans Hypothetical
protein F23B2.3 protein.
Length = 626
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 178 AGRTRNQLRPQSPTSGALHYKS*RN*LHNKKSIIIYVPMPKLKAFQKIQ 324
AG ++ L P +P+ ++ K ++ +II VPM +LK FQK +
Sbjct: 15 AGSSKESLSPSTPSP--MYPKCNFRYNDSRTQMIIEVPMAQLKKFQKAE 61
>Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical
protein F57A8.5 protein.
Length = 352
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -2
Query: 265 YCVVNFFSFCNVKLPKLGFEVGVGFEFDQRLRDRGL 158
YC++N FCN +P++ + V Q + L
Sbjct: 258 YCLMNLLFFCNPAIPEISEDAVVKLSRQQNIYSNAL 293
>U80029-13|AAB37592.2| 429|Caenorhabditis elegans Hypothetical
protein T20D4.5 protein.
Length = 429
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -2
Query: 187 FDQRLRDRGLEGIRLSTACFDDLRTHRSNVINIAITFL 74
FD R + R +E + + DD+ HR+ + + +L
Sbjct: 348 FDLRNKGRNVEKVVVKMTGMDDITQHRAGTVECCLNYL 385
>AL034393-8|CAA22313.1| 241|Caenorhabditis elegans Hypothetical
protein Y18D10A.10 protein.
Length = 241
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 416 LWLGLGRILRSPTKTTCLPLNFF 348
+W+G R R P K +C PL+ F
Sbjct: 143 VWVGAYRKARCPNKPSCTPLDTF 165
>AC006762-8|AAP31426.1| 295|Caenorhabditis elegans Hypothetical
protein Y42G9A.3b protein.
Length = 295
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 479 GNTEVKCPLSVASFCLLATRVLWLGLGRILRSPTKTTCL 363
GN CP +++ LL RVL+LG R+ P CL
Sbjct: 161 GNYIDSCPSNISVLTLL--RVLYLGGNRLREIPASIGCL 197
>AC006762-7|AAF60555.1| 375|Caenorhabditis elegans Hypothetical
protein Y42G9A.3a protein.
Length = 375
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 479 GNTEVKCPLSVASFCLLATRVLWLGLGRILRSPTKTTCL 363
GN CP +++ LL RVL+LG R+ P CL
Sbjct: 161 GNYIDSCPSNISVLTLL--RVLYLGGNRLREIPASIGCL 197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,318,035
Number of Sequences: 27780
Number of extensions: 194697
Number of successful extensions: 549
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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