Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0399
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    26   0.25 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.4  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   7.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.5  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 149 DSFETSISQALVELETNSDLKAQLRE 226
           ++  T++S AL EL  N D++ +LRE
Sbjct: 307 ETSSTTMSNALYELALNQDVQKKLRE 332


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 59  DLIVV*KRNCNIYYIGTMSTKIIKASG 139
           D++   K+N N+Y + T+  K +  SG
Sbjct: 448 DVLTDPKKNPNVYKVETVGDKYMAVSG 474


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 59  DLIVV*KRNCNIYYIGTMSTKIIKASG 139
           D++   K+N N+Y + T+  K +  SG
Sbjct: 448 DVLTDPKKNPNVYKVETVGDKYMAVSG 474


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 19  CFFSVKLLNIVLN 57
           CFF  K +N +LN
Sbjct: 122 CFFKYKTINQILN 134


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 387 VSNKDYMFTTELLFELTD 334
           +SN   M  TELL ELT+
Sbjct: 2   LSNNSSMTQTELLQELTN 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,403
Number of Sequences: 438
Number of extensions: 2214
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)