Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0399
(494 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 71 3e-13
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 71 3e-13
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 69 2e-12
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 61 5e-10
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 61 5e-10
At1g43090.1 68414.m04964 glycoside hydrolase family 28 protein /... 29 2.3
At1g43080.1 68414.m04963 glycoside hydrolase family 28 protein /... 29 2.3
At3g16730.1 68416.m02136 expressed protein ; expression supporte... 27 5.3
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar... 27 5.3
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar... 27 5.3
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 6.9
At1g43100.1 68414.m04965 glycoside hydrolase family 28 protein /... 27 6.9
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 71.3 bits (167), Expect = 3e-13
Identities = 34/77 (44%), Positives = 47/77 (61%)
Frame = +1
Query: 262 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 441
N+K+++IYVP KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +
Sbjct: 57 NRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAVQRPRN 116
Query: 442 EATLKGHLTSVLPIAIP 492
H + +A P
Sbjct: 117 RTLTSVHEAMLEDVAYP 133
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 71.3 bits (167), Expect = 3e-13
Identities = 34/77 (44%), Positives = 47/77 (61%)
Frame = +1
Query: 262 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 441
N+K+++IYVP KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +
Sbjct: 57 NRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAVQRPRN 116
Query: 442 EATLKGHLTSVLPIAIP 492
H + +A P
Sbjct: 117 RTLTSVHEAMLEDVAYP 133
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 68.5 bits (160), Expect = 2e-12
Identities = 34/77 (44%), Positives = 45/77 (58%)
Frame = +1
Query: 262 NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQK 441
N+K+++IYVP KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +
Sbjct: 57 NRKAVVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAVQRPRN 116
Query: 442 EATLKGHLTSVLPIAIP 492
H + +A P
Sbjct: 117 RTLTSVHEAMLEDVAFP 133
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 60.9 bits (141), Expect = 5e-10
Identities = 29/63 (46%), Positives = 43/63 (68%)
Frame = +1
Query: 265 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKE 444
+K+I++ VP KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A + +
Sbjct: 58 RKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAAKRPRN 116
Query: 445 ATL 453
TL
Sbjct: 117 RTL 119
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 60.9 bits (141), Expect = 5e-10
Identities = 29/63 (46%), Positives = 43/63 (68%)
Frame = +1
Query: 265 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKE 444
+K+I++ VP KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A + +
Sbjct: 58 RKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAAKRPRN 116
Query: 445 ATL 453
TL
Sbjct: 117 RTL 119
>At1g43090.1 68414.m04964 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 444
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -2
Query: 235 NVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTACFDDLRTHRSNVINIAIT 80
N PKL +G F + R++D + + F+ HR N+ + IT
Sbjct: 144 NTNCPKLAMTMGFAFVNNSRIKD--ITSLNSKMGHFNFFSVHRFNITGVTIT 193
>At1g43080.1 68414.m04963 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 404
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -2
Query: 235 NVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTACFDDLRTHRSNVINIAIT 80
N PKL +G F + R++D + + F+ HR N+ + IT
Sbjct: 144 NTNCPKLAMTMGFAFVNNSRIKD--ITSLNSKMGHFNFFSVHRFNITGVTIT 193
>At3g16730.1 68416.m02136 expressed protein ; expression supported
by MPSS
Length = 695
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 391 KILPKPSHKTRVANKQKEATLKGHLTSVLPIAIP 492
K+ KP K ++ K + K H+TS+ P+A P
Sbjct: 326 KLKVKPFKKVKILKKIGWSITKDHMTSMFPLARP 359
>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 669
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 397 LPKPSHKTRVANKQKEATLKGHLTSV 474
L KPSHK+ + K EA L G L++V
Sbjct: 481 LLKPSHKSTLQTKTLEAPLPGSLSAV 506
>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 668
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 397 LPKPSHKTRVANKQKEATLKGHLTSV 474
L KPSHK+ + K EA L G L++V
Sbjct: 480 LLKPSHKSTLQTKTLEAPLPGSLSAV 505
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 186 NSKPTPTSKPNFGSF 230
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
>At1g43100.1 68414.m04965 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 444
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 235 NVKLPKLGFEVGVGFEFDQRLRDRGLEGIRLSTACFDDLRTHRSNVINIAIT 80
N P+L +G F + R++D + + F+ HR N+ + IT
Sbjct: 144 NTNCPELAMTMGFAFVNNSRIKD--ITSLNSKMGHFNFFSVHRFNITGVTIT 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,713,783
Number of Sequences: 28952
Number of extensions: 182403
Number of successful extensions: 493
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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