Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0398
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 158 6e-40
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 87 2e-18
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 69 4e-13
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 52 4e-08
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 50 2e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 42 8e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 0.002
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 27 1.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.3
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 25 5.3
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 25 5.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 7.0
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 158 bits (383), Expect = 6e-40
Identities = 87/140 (62%), Positives = 98/140 (70%), Gaps = 1/140 (0%)
Frame = +2
Query: 104 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAK 283
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 284 EVS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMT 460
P GIV+ + + V APEEHP LLTEAP NPK NREKMT
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRV-APEEHPCLLTEAPLNPKSNREKMT 120
Query: 461 QIMFETFNTPAMYVDIKAVL 520
QI+FETFN PA YV I+AVL
Sbjct: 121 QIIFETFNAPAFYVAIQAVL 140
Score = 70.9 bits (166), Expect = 1e-13
Identities = 35/56 (62%), Positives = 40/56 (71%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H + +KIWHHTFYNELRV+P P
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVN-NWDDMEKIWHHTFYNELRVAPEEHP 102
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 86.6 bits (205), Expect = 2e-18
Identities = 50/134 (37%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAKEVS*PS 301
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 302 NTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAPNPK-GNREKMTQIMFET 478
P GI+ + I S PEEHP+LLTE P N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 479 FNTPAMYVDIKAVL 520
N PA+ ++ VL
Sbjct: 132 LNVPALSFSLQPVL 145
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 68.9 bits (161), Expect = 4e-13
Identities = 51/140 (36%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Frame = +2
Query: 110 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDFM*EMRHRAK 283
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD M A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 284 EVS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMT 460
P GI+ + + + P +LLTE P NP NREKM
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKI-DPRGRKILLTEPPMNPVANREKMC 120
Query: 461 QIMFETFNTPAMYVDIKAVL 520
+ MFE + +YV I+AVL
Sbjct: 121 ETMFERYGFGGVYVAIQAVL 140
Score = 39.9 bits (89), Expect = 2e-04
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 226 RDGRYGTEGLYVRDEAQSKRGILTLKYPIKHRN-RSLTGMTWKKIWHHTFYNELRVSPRG 402
+ G + + V DEA++ R +L +KYP+++ R M ++W +TF+ +L++ PRG
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMN--QLWDYTFFEKLKIDPRG 100
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 52.4 bits (120), Expect = 4e-08
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAKE 286
+EV+A+V+D GS + GF+G+D P+ V PS G G++ F E +++
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE-------FSDGRRLFGEEYIYKSNP 61
Query: 287 VS*PSNTPSNTGIVH-*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEA-PNPKGNREKMT 460
N N + + + R+G+ + P EHP+L+TE NP NR K
Sbjct: 62 GMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKT---NPLEHPILITEPFDNPPENRVKTL 118
Query: 461 QIMFETFNTPAMYV 502
+ MFE+ PA Y+
Sbjct: 119 ETMFESLRCPATYL 132
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 50.4 bits (115), Expect = 2e-07
Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +2
Query: 395 PEEHPVLLTEAP-NPKGNREKMTQIMFETFNTPAMYVDIKAVL 520
PE+H LLTE P NP NRE +IMFE+FN +Y+ ++AVL
Sbjct: 121 PEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVL 163
Score = 40.7 bits (91), Expect = 1e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 205
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 41.5 bits (93), Expect = 8e-05
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV--MVGMGQKDFM*EMRHRAKEVS- 292
LV+DNGS +AG+ G+ P+ VF ++V R R + + + D + E+ R+ S
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKLSRTSTLVGNDTLIEVGSRSIARSP 86
Query: 293 *PSNTPSNTGIV-H*LG*HGRRFGIIPSTMSCV*APEEHPVLLTE-APNPKGNREKMTQI 466
N SN ++ L + GI M EHP+ +TE NP R MT++
Sbjct: 87 FERNVISNWDLMEQVLDYTFLKLGI--DRM-------EHPICMTEPLANPTYVRSTMTEL 137
Query: 467 MFETFNTPAM 496
+FE +N P++
Sbjct: 138 LFELYNAPSV 147
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 208
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 291 DTSFALCLISYIKSFCPIPTITP*WRGLPTIEGNTARGASSPAKPALHIP 142
+TSFAL S S PT + P +E + +S+PA P L+ P
Sbjct: 79 ETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAAPQLNSP 128
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 255 KSFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 151
KSF P+PT P LPT NT + P+ PAL
Sbjct: 68 KSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -3
Query: 237 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 103
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.4 bits (53), Expect = 5.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 298 LKYPIKHRNRSLTGMTWKKIW 360
LK+P+ HR + G+ KK++
Sbjct: 147 LKFPLPHRRTGVVGLAGKKVF 167
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.4 bits (53), Expect = 5.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 298 LKYPIKHRNRSLTGMTWKKIW 360
LK+P+ HR + G+ KK++
Sbjct: 147 LKFPLPHRRTGVVGLAGKKVF 167
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +2
Query: 167 GDDAPRAVFPSIVGRPRHQGVMVGM----GQKDFM 259
G+ PRA F ++ P H G+++ M G ++FM
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISMKDWIGGEEFM 536
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAG 169
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,089
Number of Sequences: 5004
Number of extensions: 48355
Number of successful extensions: 144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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