Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0398
(530 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 173 5e-44
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 173 5e-44
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 173 5e-44
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 173 5e-44
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 173 5e-44
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 173 5e-44
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 172 1e-43
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 171 4e-43
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 168 2e-42
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 135 2e-32
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 113 6e-26
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 113 6e-26
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 112 1e-25
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 112 1e-25
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 97 5e-21
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 83 1e-16
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 73 2e-13
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 50 1e-06
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 48 4e-06
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 28 3.6
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 4.8
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase... 27 6.3
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase... 27 6.3
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de... 27 6.3
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de... 27 6.3
U55374-4|AAB36866.2| 589|Caenorhabditis elegans Immunoglobulin-... 27 8.4
U55374-3|ABS19462.1| 591|Caenorhabditis elegans Immunoglobulin-... 27 8.4
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 173 bits (422), Expect = 5e-44
Identities = 97/142 (68%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHR 277
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 AKEVS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREK 454
+K P GIV + + V APEEHPVLLTEAP NPK NREK
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREK 119
Query: 455 MTQIMFETFNTPAMYVDIKAVL 520
MTQIMFETFNTPAMYV I+AVL
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVL 141
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H +KIWHHTFYNELRV+P P
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEH-GIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 173 bits (422), Expect = 5e-44
Identities = 97/142 (68%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHR 277
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 AKEVS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREK 454
+K P GIV + + V APEEHPVLLTEAP NPK NREK
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREK 119
Query: 455 MTQIMFETFNTPAMYVDIKAVL 520
MTQIMFETFNTPAMYV I+AVL
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVL 141
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H +KIWHHTFYNELRV+P P
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEH-GIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 173 bits (422), Expect = 5e-44
Identities = 97/142 (68%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHR 277
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 AKEVS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREK 454
+K P GIV + + V APEEHPVLLTEAP NPK NREK
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREK 119
Query: 455 MTQIMFETFNTPAMYVDIKAVL 520
MTQIMFETFNTPAMYV I+AVL
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVL 141
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H +KIWHHTFYNELRV+P P
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEH-GIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 173 bits (422), Expect = 5e-44
Identities = 97/142 (68%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHR 277
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 AKEVS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREK 454
+K P GIV + + V APEEHPVLLTEAP NPK NREK
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREK 119
Query: 455 MTQIMFETFNTPAMYVDIKAVL 520
MTQIMFETFNTPAMYV I+AVL
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVL 141
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H +KIWHHTFYNELRV+P P
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEH-GIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 173 bits (422), Expect = 5e-44
Identities = 97/142 (68%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHR 277
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 AKEVS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREK 454
+K P GIV + + V APEEHPVLLTEAP NPK NREK
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREK 119
Query: 455 MTQIMFETFNTPAMYVDIKAVL 520
MTQIMFETFNTPAMYV I+AVL
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVL 141
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H +KIWHHTFYNELRV+P P
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEH-GIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 173 bits (422), Expect = 5e-44
Identities = 97/142 (68%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHR 277
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 AKEVS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREK 454
+K P GIV + + V APEEHPVLLTEAP NPK NREK
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREK 119
Query: 455 MTQIMFETFNTPAMYVDIKAVL 520
MTQIMFETFNTPAMYV I+AVL
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVL 141
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H +KIWHHTFYNELRV+P P
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEH-GIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 172 bits (419), Expect = 1e-43
Identities = 96/142 (67%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHR 277
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 AKEVS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREK 454
+K P GIV + + V APEEHPVLLTEAP NPK NREK
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREK 119
Query: 455 MTQIMFETFNTPAMYVDIKAVL 520
MTQIMFETFNTPAMYV I+AVL
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVL 141
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H +KIWHHTFYNELRV+P P
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEH-GIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 171 bits (415), Expect = 4e-43
Identities = 94/142 (66%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHR 277
MCD++VAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD +
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 278 AKEVS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREK 454
+K P GIV + + V APEEHPVLLTEAP NPK NREK
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREK 119
Query: 455 MTQIMFETFNTPAMYVDIKAVL 520
MTQIMFETFNTPAMYV I+AVL
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVL 141
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H +KIWHHTFYNELRV+P P
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEH-GIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 168 bits (408), Expect = 2e-42
Identities = 93/140 (66%), Positives = 102/140 (72%), Gaps = 1/140 (0%)
Frame = +2
Query: 104 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAK 283
+EE+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD ++K
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 284 EVS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMT 460
P GIV + + + APEEHPVLLTEAP NPK NREKMT
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRI-APEEHPVLLTEAPLNPKSNREKMT 120
Query: 461 QIMFETFNTPAMYVDIKAVL 520
QIMFETFNTPAMYV+I+AVL
Sbjct: 121 QIMFETFNTPAMYVNIQAVL 140
Score = 70.9 bits (166), Expect = 5e-13
Identities = 34/56 (60%), Positives = 39/56 (69%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H +KIWHHTFYNELR++P P
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEH-GIVTNWDDMEKIWHHTFYNELRIAPEEHP 102
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 135 bits (326), Expect = 2e-32
Identities = 79/124 (63%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
Frame = +2
Query: 152 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAKEVS*PSNTPSNTGIVH 331
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD ++K P GIV
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 332 *LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMTQIMFETFNTPAMYVDI 508
+ + V APEEHPVLLTEAP NPK NREKMTQIMFETFNTPAMYV I
Sbjct: 65 NWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 123
Query: 509 KAVL 520
+AVL
Sbjct: 124 QAVL 127
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H +KIWHHTFYNELRV+P P
Sbjct: 35 GQKDSYVGDEAQSKRGILTLKYPIEH-GIVTNWDDMEKIWHHTFYNELRVAPEEHP 89
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 113 bits (273), Expect = 6e-26
Identities = 51/52 (98%), Positives = 52/52 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKH 318
G + YV DEAQSKRGILTLKYPI+H
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEH 74
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 113 bits (273), Expect = 6e-26
Identities = 51/52 (98%), Positives = 52/52 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKH 318
G + YV DEAQSKRGILTLKYPI+H
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEH 74
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 112 bits (270), Expect = 1e-25
Identities = 50/52 (96%), Positives = 52/52 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKH 318
G + YV DEAQSKRGILTLKYPI+H
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEH 74
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 112 bits (270), Expect = 1e-25
Identities = 50/52 (96%), Positives = 52/52 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKH 318
G + YV DEAQSKRGILTLKYPI+H
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEH 74
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 97.5 bits (232), Expect = 5e-21
Identities = 55/134 (41%), Positives = 75/134 (55%), Gaps = 1/134 (0%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAKEVS*PS 301
+V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D + +
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKAESNRGLFSI 70
Query: 302 NTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMTQIMFET 478
P GIV+ + + I PEEHPVLLT+AP NP NRE+ +I FET
Sbjct: 71 EYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRERSAEIFFET 130
Query: 479 FNTPAMYVDIKAVL 520
FN PA+Y+ ++AVL
Sbjct: 131 FNVPALYIQMQAVL 144
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 83.0 bits (196), Expect = 1e-16
Identities = 40/44 (90%), Positives = 41/44 (93%), Gaps = 1/44 (2%)
Frame = +2
Query: 392 APEEHPVLLTEAP-NPKGNREKMTQIMFETFNTPAMYVDIKAVL 520
APEEHPVLLTEAP NPK NREKMTQIMFETFNTPAMYV I+AVL
Sbjct: 54 APEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 97
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/56 (62%), Positives = 39/56 (69%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H +KIWHHTFYNELRV+P P
Sbjct: 5 GQKDSYVGDEAQSKRGILTLKYPIEH-GIVTNWDDMEKIWHHTFYNELRVAPEEHP 59
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 72.5 bits (170), Expect = 2e-13
Identities = 51/136 (37%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM-VGMGQ-KDFM*EMRHRAKEVS* 295
+VVDNG+G K G+AG + P +FPS+VGRP + VG + KD M
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 296 PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMTQIMF 472
N P + GIV + P+E +LLTE P NP NREKM Q+MF
Sbjct: 69 DINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMF 128
Query: 473 ETFNTPAMYVDIKAVL 520
E + ++YV ++AVL
Sbjct: 129 EQYGFNSIYVAVQAVL 144
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +2
Query: 395 PEEHPVLLTEAP-NPKGNREKMTQIMFETFNTPAMYVDIKAVL 520
PE+H LLTE P N NRE +IMFE+FN P +Y+ ++AVL
Sbjct: 112 PEDHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVL 154
Score = 36.7 bits (81), Expect = 0.010
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 205
M ++ A V+DNG+G K G+AG+ P+ + PS +
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAI 36
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +2
Query: 395 PEEHPVLLTEAP-NPKGNREKMTQIMFETFNTPAMYVDIKAVL 520
P EHPVL +E+ N + REK+T+IMFE F PA Y+ VL
Sbjct: 121 PSEHPVLFSESSWNDRARREKLTEIMFEKFQVPAYYLSKNVVL 163
Score = 33.5 bits (73), Expect = 0.097
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 205
+EV+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 202 RGKAPPSGRDGRYGTEGLYVRDEAQSKRG 288
RGKA +GRDGR G EG Q +RG
Sbjct: 216 RGKAGHTGRDGRPGLEGTPGTRGVQGERG 244
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 223 GRDGRYGTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRG 402
GR G G+ G +RD S + ++ H N +++ +I N++ + RG
Sbjct: 65 GRGGSNGSAGGRLRDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRG 124
Query: 403 TPSP 414
P P
Sbjct: 125 VPRP 128
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 152 KAGFAGDDAPRAVFPSIVGRPRHQG 226
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
beta protein.
Length = 1418
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 177 ASSPAKPALHIPEPLSTTNAATSS 106
+SSPA P++ P P +T++ +TSS
Sbjct: 652 SSSPATPSISGPPPCATSSGSTSS 675
>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
beta homolog EGL-8 protein.
Length = 1431
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 177 ASSPAKPALHIPEPLSTTNAATSS 106
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
defective protein 8,isoform a protein.
Length = 1419
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 177 ASSPAKPALHIPEPLSTTNAATSS 106
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
defective protein 8,isoform b protein.
Length = 1431
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 177 ASSPAKPALHIPEPLSTTNAATSS 106
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>U55374-4|AAB36866.2| 589|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform a protein.
Length = 589
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 410 VLLTEAPNPKGNREKMTQIMFETFNTP 490
V +T+AP P N E++ Q+++ TP
Sbjct: 28 VKITDAPYPVANAEQLNQVVWTMHGTP 54
>U55374-3|ABS19462.1| 591|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform b protein.
Length = 591
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 410 VLLTEAPNPKGNREKMTQIMFETFNTP 490
V +T+AP P N E++ Q+++ TP
Sbjct: 28 VKITDAPYPVANAEQLNQVVWTMHGTP 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,898,753
Number of Sequences: 27780
Number of extensions: 291324
Number of successful extensions: 1087
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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