Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0398
(530 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 153 9e-38
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 153 9e-38
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 152 2e-37
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 150 5e-37
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 150 5e-37
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 150 7e-37
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 145 2e-35
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 145 2e-35
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 145 2e-35
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 134 3e-32
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 104 4e-23
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 72 3e-13
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 68 5e-12
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 58 3e-09
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 57 6e-09
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 57 9e-09
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 48 5e-06
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 36 0.023
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 35 0.030
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 33 0.16
At1g71850.1 68414.m08303 expressed protein ; expression supporte... 29 2.0
At4g36790.1 68417.m05219 transporter-related low similarity to s... 28 3.4
At1g43245.1 68414.m04985 expressed protein 28 3.4
At5g64520.2 68418.m08107 DNA repair protein-related contains wea... 28 4.5
At5g64520.1 68418.m08106 DNA repair protein-related contains wea... 28 4.5
At4g38310.1 68417.m05414 galactosyl transferase GMA12/MNN10 fami... 28 4.5
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 27 6.0
At1g19485.1 68414.m02427 AT hook motif-containing protein contai... 27 6.0
At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327 27 7.9
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 153 bits (370), Expect = 9e-38
Identities = 87/139 (62%), Positives = 96/139 (69%), Gaps = 1/139 (0%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAKE 286
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 287 VS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMTQ 463
P GIV+ + + V APEEHPVLLTEAP NPK NREKMTQ
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQ 123
Query: 464 IMFETFNTPAMYVDIKAVL 520
IMFETFNTPAMYV I+AVL
Sbjct: 124 IMFETFNTPAMYVAIQAVL 142
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/56 (62%), Positives = 40/56 (71%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H + +KIWHHTFYNELRV+P P
Sbjct: 50 GQKDAYVGDEAQSKRGILTLKYPIEHGIVN-NWDDMEKIWHHTFYNELRVAPEEHP 104
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 153 bits (370), Expect = 9e-38
Identities = 87/139 (62%), Positives = 96/139 (69%), Gaps = 1/139 (0%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAKE 286
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 287 VS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMTQ 463
P GIV+ + + V APEEHPVLLTEAP NPK NREKMTQ
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQ 123
Query: 464 IMFETFNTPAMYVDIKAVL 520
IMFETFNTPAMYV I+AVL
Sbjct: 124 IMFETFNTPAMYVAIQAVL 142
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/56 (62%), Positives = 40/56 (71%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H + +KIWHHTFYNELRV+P P
Sbjct: 50 GQKDAYVGDEAQSKRGILTLKYPIEHGIVN-NWDDMEKIWHHTFYNELRVAPEEHP 104
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 152 bits (368), Expect = 2e-37
Identities = 87/139 (62%), Positives = 95/139 (68%), Gaps = 1/139 (0%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAKE 286
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 287 VS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMTQ 463
P GIV + + V APEEHPVLLTEAP NPK NREKMTQ
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQ 123
Query: 464 IMFETFNTPAMYVDIKAVL 520
IMFETFNTPAMYV I+AVL
Sbjct: 124 IMFETFNTPAMYVAIQAVL 142
Score = 72.5 bits (170), Expect = 2e-13
Identities = 36/56 (64%), Positives = 40/56 (71%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H S +KIWHHTFYNELRV+P P
Sbjct: 50 GQKDAYVGDEAQSKRGILTLKYPIEHGIVS-NWDDMEKIWHHTFYNELRVAPEEHP 104
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 150 bits (364), Expect = 5e-37
Identities = 85/139 (61%), Positives = 95/139 (68%), Gaps = 1/139 (0%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAKE 286
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 287 VS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMTQ 463
P GIV+ + + V APEEHP+LLTEAP NPK NREKMTQ
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRV-APEEHPILLTEAPLNPKANREKMTQ 123
Query: 464 IMFETFNTPAMYVDIKAVL 520
IMFETFN PAMYV I+AVL
Sbjct: 124 IMFETFNAPAMYVAIQAVL 142
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/56 (62%), Positives = 40/56 (71%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H + +KIWHHTFYNELRV+P P
Sbjct: 50 GQKDAYVGDEAQSKRGILTLKYPIEHGIVN-NWDDMEKIWHHTFYNELRVAPEEHP 104
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 150 bits (364), Expect = 5e-37
Identities = 85/139 (61%), Positives = 95/139 (68%), Gaps = 1/139 (0%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAKE 286
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 287 VS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMTQ 463
P GIV+ + + V APEEHP+LLTEAP NPK NREKMTQ
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRV-APEEHPILLTEAPLNPKANREKMTQ 123
Query: 464 IMFETFNTPAMYVDIKAVL 520
IMFETFN PAMYV I+AVL
Sbjct: 124 IMFETFNAPAMYVAIQAVL 142
Score = 71.3 bits (167), Expect = 4e-13
Identities = 35/56 (62%), Positives = 40/56 (71%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H + +KIWHHTFYNELRV+P P
Sbjct: 50 GQKDAYVGDEAQSKRGILTLKYPIEHGIVN-NWDDMEKIWHHTFYNELRVAPEEHP 104
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 150 bits (363), Expect = 7e-37
Identities = 86/139 (61%), Positives = 94/139 (67%), Gaps = 1/139 (0%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAKE 286
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 287 VS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMTQ 463
P GIV + + V APEEHPVLLTEAP NPK NREKMTQ
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQ 123
Query: 464 IMFETFNTPAMYVDIKAVL 520
IMFETFN PAMYV I+AVL
Sbjct: 124 IMFETFNVPAMYVAIQAVL 142
Score = 72.5 bits (170), Expect = 2e-13
Identities = 36/56 (64%), Positives = 40/56 (71%)
Frame = +1
Query: 241 GTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
G + YV DEAQSKRGILTLKYPI+H S +KIWHHTFYNELRV+P P
Sbjct: 50 GQKDAYVGDEAQSKRGILTLKYPIEHGIVS-NWDDMEKIWHHTFYNELRVAPEEHP 104
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 145 bits (351), Expect = 2e-35
Identities = 80/139 (57%), Positives = 94/139 (67%), Gaps = 1/139 (0%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAKE 286
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 287 VS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMTQ 463
P G+V + + + APEEHPVLLTEAP NPK NREKMTQ
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRI-APEEHPVLLTEAPLNPKANREKMTQ 123
Query: 464 IMFETFNTPAMYVDIKAVL 520
IMFETFN+PAMYV I+AVL
Sbjct: 124 IMFETFNSPAMYVAIQAVL 142
Score = 70.5 bits (165), Expect = 6e-13
Identities = 34/51 (66%), Positives = 38/51 (74%)
Frame = +1
Query: 256 YVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
YV DEAQSKRGILTLKYPI+H S +KIWHHTFYNELR++P P
Sbjct: 55 YVGDEAQSKRGILTLKYPIEHGVVS-NWDDMEKIWHHTFYNELRIAPEEHP 104
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 145 bits (351), Expect = 2e-35
Identities = 80/139 (57%), Positives = 94/139 (67%), Gaps = 1/139 (0%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAKE 286
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 287 VS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMTQ 463
P G+V + + + APEEHPVLLTEAP NPK NREKMTQ
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRI-APEEHPVLLTEAPLNPKANREKMTQ 123
Query: 464 IMFETFNTPAMYVDIKAVL 520
IMFETFN+PAMYV I+AVL
Sbjct: 124 IMFETFNSPAMYVAIQAVL 142
Score = 70.5 bits (165), Expect = 6e-13
Identities = 34/51 (66%), Positives = 38/51 (74%)
Frame = +1
Query: 256 YVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
YV DEAQSKRGILTLKYPI+H S +KIWHHTFYNELR++P P
Sbjct: 55 YVGDEAQSKRGILTLKYPIEHGVVS-NWDDMEKIWHHTFYNELRIAPEEHP 104
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 145 bits (351), Expect = 2e-35
Identities = 80/139 (57%), Positives = 94/139 (67%), Gaps = 1/139 (0%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAKE 286
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 287 VS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMTQ 463
P G+V + + + APEEHPVLLTEAP NPK NREKMTQ
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRI-APEEHPVLLTEAPLNPKANREKMTQ 123
Query: 464 IMFETFNTPAMYVDIKAVL 520
IMFETFN+PAMYV I+AVL
Sbjct: 124 IMFETFNSPAMYVAIQAVL 142
Score = 70.5 bits (165), Expect = 6e-13
Identities = 34/51 (66%), Positives = 38/51 (74%)
Frame = +1
Query: 256 YVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
YV DEAQSKRGILTLKYPI+H S +KIWHHTFYNELR++P P
Sbjct: 55 YVGDEAQSKRGILTLKYPIEHGVVS-NWDDMEKIWHHTFYNELRIAPEEHP 104
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 134 bits (325), Expect = 3e-32
Identities = 75/139 (53%), Positives = 90/139 (64%), Gaps = 1/139 (0%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDFM*EMRHRAKE 286
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM +KD +A+
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARR 65
Query: 287 VS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMTQ 463
P G+V + PEEHP+LLTEAP NPK NREKMTQ
Sbjct: 66 GILSLKYPIEHGVVSNWD-DMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREKMTQ 124
Query: 464 IMFETFNTPAMYVDIKAVL 520
IMFE+F P+MY+ I+AVL
Sbjct: 125 IMFESFAFPSMYIGIQAVL 143
Score = 63.7 bits (148), Expect = 7e-11
Identities = 30/51 (58%), Positives = 37/51 (72%)
Frame = +1
Query: 256 YVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
+V DEAQ++RGIL+LKYPI+H S +KIWHHTFYNELR+ P P
Sbjct: 56 FVGDEAQARRGILSLKYPIEHGVVS-NWDDMEKIWHHTFYNELRLEPEEHP 105
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 104 bits (249), Expect = 4e-23
Identities = 63/136 (46%), Positives = 84/136 (61%), Gaps = 2/136 (1%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD-FM*EMRHRAKEVS*P 298
+V D G GM +AGFAGD+AP+ VFP +VGRPR G+ + ++ E H +++
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVGEEGHANRDIL-T 57
Query: 299 SNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKMTQIMFE 475
P GIV+ + + V PEEHPVLLTEAP NPK NREKMTQIMFE
Sbjct: 58 LKDPMEHGIVNNWDDMEKIWHYTFYNELRV-DPEEHPVLLTEAPYNPKANREKMTQIMFE 116
Query: 476 TFNTPAMYVDIKAVLF 523
+F+ PAMYV +++VL+
Sbjct: 117 SFDVPAMYVSMQSVLY 132
Score = 52.4 bits (120), Expect = 2e-07
Identities = 29/61 (47%), Positives = 36/61 (59%)
Frame = +1
Query: 226 RDGRYGTEGLYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGT 405
RDG E YV +E + R ILTLK P++H + +KIWH+TFYNELRV P
Sbjct: 35 RDGLNPNES-YVGEEGHANRDILTLKDPMEHGIVN-NWDDMEKIWHYTFYNELRVDPEEH 92
Query: 406 P 408
P
Sbjct: 93 P 93
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 71.7 bits (168), Expect = 3e-13
Identities = 33/44 (75%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Frame = +2
Query: 392 APEEHPVLLTEAP-NPKGNREKMTQIMFETFNTPAMYVDIKAVL 520
APEEHPVLLTEAP NPK +REKMTQIMFETF P+MY+ ++A L
Sbjct: 54 APEEHPVLLTEAPLNPKADREKMTQIMFETFAVPSMYIGMQAAL 97
Score = 55.6 bits (128), Expect = 2e-08
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = +1
Query: 253 LYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSPRGTP 408
L+V D+A+++ GILTL YP++H S +KIW+HTFY+ELRV+P P
Sbjct: 9 LFVGDDAEARSGILTLDYPMEHGVVS-NWDDMEKIWYHTFYSELRVAPEEHP 59
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 67.7 bits (158), Expect = 5e-12
Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDFM-----*EMRHRA 280
+V DNG+G K GFAG++ P +VFP +VGRP R++ ++ KD + E+RH+
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCSELRHQL 66
Query: 281 KEVS*PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTEAP-NPKGNREKM 457
N P + GIV + + P + +LLT+ P NP NREKM
Sbjct: 67 -----DINYPVHNGIVQNWDDMEHVWDHAFYNELKI-NPSDCKILLTDPPLNPSKNREKM 120
Query: 458 TQIMFETFNTPAMYVDIKAVL 520
+ MFE +N +++ I+AVL
Sbjct: 121 IETMFEKYNFAGVFIQIQAVL 141
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 253 LYVRDEAQSKRGILTLKYPIKHRNRSLTGMTWKKIWHHTFYNELRVSP 396
+ V + R L + YP+ H + +W H FYNEL+++P
Sbjct: 53 IVVGETCSELRHQLDINYPV-HNGIVQNWDDMEHVWDHAFYNELKINP 99
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 58.4 bits (135), Expect = 3e-09
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 4/135 (2%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG---VMVGMGQKDFM*EMRHRAKEVS 292
+V+DNG+ + G+AG+ PR VF +IV RPRH+ + +G D M++ S
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKATGETVTIVGDLDPS-MMKYFDCTRS 80
Query: 293 *PSNTPSNTGIVH*LG*HGRRFGIIPSTMSCV*APEEHPVLLTE-APNPKGNREKMTQIM 469
P +P ++ +V+ + + +HP+L+TE A NP +R KM +++
Sbjct: 81 GP-RSPFDSNVVYQFEIMEYILDYAFDRLGANGSGIDHPILITECACNPVQSRSKMAELL 139
Query: 470 FETFNTPAMYVDIKA 514
FET+ PA+ + A
Sbjct: 140 FETYGVPAVAFGVDA 154
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 57.2 bits (132), Expect = 6e-09
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 208
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVG 38
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 56.8 bits (131), Expect = 9e-09
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 208
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +2
Query: 395 PEEHPVLLTEAP-NPKGNREKMTQIMFETFNTPAMYVDIKAVL 520
P EHP+LL E P N + REK ++MFE + PA+++ VL
Sbjct: 122 PTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVL 164
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 47.6 bits (108), Expect = 5e-06
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +2
Query: 395 PEEHPVLLTEAP-NPKGNREKMTQIMFETFNTPAMYVDIKAVL 520
PE+H LLTE+P P +RE +I+FETFN P +Y+ + +VL
Sbjct: 117 PEDHYFLLTESPLTPPESREYTGEILFETFNVPGLYIAVNSVL 159
Score = 35.9 bits (79), Expect = 0.017
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +2
Query: 119 ALVVDNGSGMCKAGFAGDDAPRAVFPSIV 205
A+V+DNG+G K GFAG+ P + P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 35.5 bits (78), Expect = 0.023
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 434 PKGNREKMTQIMFETFNTPAMYVDIKAVL 520
PK RE++ Q+MFETFN Y +AVL
Sbjct: 100 PKAIREQLVQLMFETFNVSGFYASEQAVL 128
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 119 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGR 211
ALVVD GS KAG A D +P + PS + R
Sbjct: 3 ALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR 34
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 35.1 bits (77), Expect = 0.030
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -3
Query: 282 FALCLISYIKSF-CPIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 106
+ + + YI + P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 276 YYMATLPYISAIGIPTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 214
+V+DNG G+ KAG G+ P V P+ + +P
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35
>At1g71850.1 68414.m08303 expressed protein ; expression supported
by MPSS
Length = 470
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 196 LDRGKAPPSGRDGRYGTEGLYVRDEAQSKRGILTLKYPIKHRNR 327
L+RG+ S R GR RD+AQS+R ++LK K R+R
Sbjct: 426 LERGRRNSSPRSGRRSFGNSGSRDKAQSRRSKISLKTE-KKRSR 468
>At4g36790.1 68417.m05219 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003976, GI:12003972, GI:12003974,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 489
Score = 28.3 bits (60), Expect = 3.4
Identities = 31/118 (26%), Positives = 53/118 (44%)
Frame = -3
Query: 504 STYMAGVLNVSNMIWVIFSLLPLGLGASVSRTGCSSGAHTQLIVEGMMPNLLPCHPS**T 325
S + V+ S + IFS+ +G ++ T C S + + E ++P P H +
Sbjct: 345 SIILLKVIPQSTSSYSIFSITLFLMGLTI--TWCGSAVNAPMFAE-VVP---PRHRT--M 396
Query: 324 IPVFDGVFEGQDTSFALCLISYIKSFCPIPTITP*WRGLPTIEGNTARGASSPAKPAL 151
I FD FEG +SFA L+ + RG+ ++G++ R A + +K L
Sbjct: 397 IYAFDRAFEGSFSSFAAPLVGILSE----KLFGYDSRGIDPLKGSSVREADALSKGLL 450
>At1g43245.1 68414.m04985 expressed protein
Length = 558
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 277 SVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIIS 167
S PH L+ +L T+HH LMA PS H A + I+
Sbjct: 96 SSPHRLNNLL---TNHHLLMADPSISVAIHHAANFIA 129
>At5g64520.2 68418.m08107 DNA repair protein-related contains weak
similarity to DNA-repair protein XRCC2 (X-ray repair
cross-complementing protein 2) (Swiss-Prot:O43543) [Homo
sapiens]
Length = 342
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 444 LPLGLGASVSRTGCSSGAHTQLIVEGMMPNLLP 346
+PL G V TG S+ A TQ++++ + +LP
Sbjct: 38 VPLRAGNVVEITGASTSAKTQILIQAAISCILP 70
>At5g64520.1 68418.m08106 DNA repair protein-related contains weak
similarity to DNA-repair protein XRCC2 (X-ray repair
cross-complementing protein 2) (Swiss-Prot:O43543) [Homo
sapiens]
Length = 372
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 444 LPLGLGASVSRTGCSSGAHTQLIVEGMMPNLLP 346
+PL G V TG S+ A TQ++++ + +LP
Sbjct: 38 VPLRAGNVVEITGASTSAKTQILIQAAISCILP 70
>At4g38310.1 68417.m05414 galactosyl transferase GMA12/MNN10 family
protein other predicted proteins Arabidopsis thaliana
Length = 120
Score = 27.9 bits (59), Expect = 4.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 288 YPDPQIPHQTQESFTNWDDMEED 356
Y DP + + ++S TNWD+ +
Sbjct: 11 YDDPDLSYSIEKSITNWDEKRHE 33
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 219 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 97
WR P + + A+GA P + AL +PL+ ++ +S+ +
Sbjct: 167 WRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFV 207
>At1g19485.1 68414.m02427 AT hook motif-containing protein contains
Pfam profile: PF00730 HhH-GPD superfamily base excision
DNA repair protein; contains Pfam PF02178: AT hook
motif; contains Pfam PF00400: WD domain, G-beta repeat
(5 copies); contains Prosite PS00354: HMG-I and HMG-Y
DNA-binding domain (A+T-hook)
Length = 815
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 395 PEEHPVLLTEAPNPKGN-REKMTQIMFETFNTPAMYVDIKAVLF 523
P +HPV TE P+G R+K T + + +YV+ +V +
Sbjct: 215 PRKHPVETTEPKKPRGRPRKKSTAELPVELDDDVLYVEALSVRY 258
>At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327
Length = 859
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 346 WKKIWHHTFYNELRVSPRGTPSPAH*GSQ 432
W +++ + +YN+L V P+ P P G+Q
Sbjct: 196 WDRVYDYAYYNDLGVPPK-NPRPVLGGTQ 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,256,310
Number of Sequences: 28952
Number of extensions: 277568
Number of successful extensions: 715
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -