Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0397
         (470 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6BFG8 Cluster: ATP-binding cassette transporter, putat...    33   2.4  
UniRef50_A5K6F1 Cluster: Putative uncharacterized protein; n=1; ...    33   2.4  
UniRef50_A4ITE2 Cluster: Polymerase; n=1; Geobacillus thermodeni...    33   4.2  
UniRef50_UPI00004986EC Cluster: hypothetical protein 337.t00004;...    31   9.7  

>UniRef50_Q6BFG8 Cluster: ATP-binding cassette transporter, putative;
            n=1; Paramecium tetraurelia|Rep: ATP-binding cassette
            transporter, putative - Paramecium tetraurelia
          Length = 1299

 Score = 33.5 bits (73), Expect = 2.4
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -1

Query: 425  KNRDPLTHFFNRYFGNRRPFFSGDQFNVTF-CQFKNMSFSRYFCILNVCVTVQIL-NYRS 252
            KNR  +T F NR F N       DQ N+ F    ++  FS+ +  L   V  Q++ ++  
Sbjct: 1219 KNRQEITQFLNRQFQNITEIIQKDQENLQFHIPSQSFDFSKAYFSLTELVQKQLIHDFSI 1278

Query: 251  SSGSLEN 231
            +  SLE+
Sbjct: 1279 NQSSLES 1285


>UniRef50_A5K6F1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 1456

 Score = 33.5 bits (73), Expect = 2.4
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -1

Query: 419 RDPLTHFFNRYFGNRRPFFSGDQFNVTFCQFKNMSFSRYFCILNVCVT 276
           +D    +F++Y  NRR  F  + +N+ F + +   F+RY+ ++N  ++
Sbjct: 761 KDRTMVYFSKYIKNRRENFDENLYNLFFKENEKRDFARYYDVVNKMIS 808


>UniRef50_A4ITE2 Cluster: Polymerase; n=1; Geobacillus
           thermodenitrificans NG80-2|Rep: Polymerase - Geobacillus
           thermodenitrificans (strain NG80-2)
          Length = 439

 Score = 32.7 bits (71), Expect = 4.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 326 KNMSFSRYFCILNVCVTVQILNYRSSSGSLENSALFAFINFYM 198
           KN+    YF IL +C T Q  N  +  G L  S +F F+  ++
Sbjct: 5   KNVFILIYFTILLICTTYQDFNLVNKFGELARSPIFLFVPIFI 47


>UniRef50_UPI00004986EC Cluster: hypothetical protein 337.t00004;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 337.t00004 - Entamoeba histolytica HM-1:IMSS
          Length = 319

 Score = 31.5 bits (68), Expect = 9.7
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
 Frame = -3

Query: 309 PIFLYFECVRNSANIKLSIIIWI------SGEFGVICIY*FLHGHLKRIVIIK*SFTEIK 148
           P  L++ECV +  +I LSII+ +      +GE+ ++ I   L   L   +IIK SFT +K
Sbjct: 149 PAMLWYECVCSCCSILLSIILLLQQCLFGTGEYDLLLII-TLRDLL--YLIIK-SFTMLK 204

Query: 147 IRIL*LVLH*ANLF-----GTFFFCFSNICSCVRHNFVIIVLMRNKFLH 16
             I  L +H  N+F      +F  C  +  + +R    +I L+R K +H
Sbjct: 205 ASIY-LTIH-INIFLVRSVTSFCLCLKDTFTLLRQFPTMITLIRIKEVH 251


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,426,310
Number of Sequences: 1657284
Number of extensions: 7314958
Number of successful extensions: 14053
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14051
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26030843530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)