Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0397
         (470 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   2.5  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   5.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   5.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   5.7  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   7.6  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   7.6  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   7.6  

>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 20  KNLLRIKTIITKLCRTQLQIF 82
           KNLL  K I+T L +T+  IF
Sbjct: 83  KNLLYSKQIVTILKKTKSNIF 103


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 308 RYFCILNVCVTVQILNYRSSS 246
           +YFC++  C+   I  Y  S+
Sbjct: 383 QYFCLMARCLNTLIFYYHIST 403


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 344 VTFCQFKNMSFSRYFCILNV 285
           V F    NM+F   F ++NV
Sbjct: 449 VLFVFLTNMTFQNVFAVINV 468


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 344 VTFCQFKNMSFSRYFCILNV 285
           V F    NM+F   F ++NV
Sbjct: 449 VLFVFLTNMTFQNVFAVINV 468


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 264 KLSIIIWISGEFGV 223
           KLS + W + EFG+
Sbjct: 395 KLSTVYWFTVEFGL 408


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 5   FFFSCKNLLRIKTIITKLCRTQLQIFEK 88
           FF   K LL     +TK  R +L+ FEK
Sbjct: 165 FFVVVKMLLVRYRNLTKQLRFKLRFFEK 192


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 5   FFFSCKNLLRIKTIITKLCRTQLQIFEK 88
           FF   K LL     +TK  R +L+ FEK
Sbjct: 165 FFVVVKMLLVRYRNLTKQLRFKLRFFEK 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,251
Number of Sequences: 336
Number of extensions: 2091
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)