Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0397
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   4.4  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   5.8  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   5.8  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   5.8  

>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 7/30 (23%), Positives = 20/30 (66%)
 Frame = -1

Query: 368 FFSGDQFNVTFCQFKNMSFSRYFCILNVCV 279
           +++   F++  C+F+++S +   C+L +C+
Sbjct: 188 YYANQAFSLLPCRFQDISLTNITCLLLLCL 217


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 114 NLFGTFFFCFSNICSCVRHNFVIIVL 37
           N+   +FFC+  IC  V  NFV  V+
Sbjct: 338 NVQTEYFFCYVGICIGVYGNFVAHVI 363


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1064

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +2

Query: 20   KNLLRIKTIITKLCRTQLQIFEKQKKNVPNKLA*CNTSYNILILISVKDYFI 175
            K++ R+K  +  +   +++ F+K KK V + +        I+  + VK+ F+
Sbjct: 902  KDMARVKKALPNVTSEEVKEFQKNKKMVLDGIELVEGDLQIIRSVEVKNEFL 953


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 347  NVTFCQFKNMSFSRYFCILNVCVTV 273
            NVT  + + +S+ RY  I   C+T+
Sbjct: 1608 NVTLIELQRLSYQRYKAIEEKCITL 1632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,024
Number of Sequences: 5004
Number of extensions: 35128
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)