Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0397
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0899 + 32837027-32837215,32837366-32837547,32839056-328391...    31   0.62 
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506...    29   2.5  

>01_06_0899 +
           32837027-32837215,32837366-32837547,32839056-32839102,
           32839426-32839500,32839595-32839726,32839800-32839972,
           32840005-32840277,32840386-32840519,32840640-32840726,
           32840834-32840948
          Length = 468

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 59  CRTQLQIFEKQKKNVPNKLA*CNTSYNILILISVKDY 169
           C +++++    KK     L  CN  YN+ I +SVKD+
Sbjct: 263 CSSKIEVLLPNKKRTEGTLEHCNLHYNVAI-VSVKDF 298


>09_04_0163 -
           15249816-15249920,15250032-15250163,15250463-15250629,
           15251259-15251448,15252530-15252661,15253275-15253382,
           15253513-15253608,15253702-15253809,15253917-15254089,
           15255026-15255401,15255887-15256030,15256125-15256799,
           15256917-15256982,15257082-15257249
          Length = 879

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 464 YVSKLSN*SLGINKNRDPLTHFFNRYFGNRRPFFS 360
           ++  + N  L I  + D   HFF+++FG+ +P  S
Sbjct: 172 FILGIPNGGLEIKNDNDAGKHFFHQHFGSTKPLIS 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,374,878
Number of Sequences: 37544
Number of extensions: 176677
Number of successful extensions: 271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)