Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0397
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026)          29   1.9  
SB_56066| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)           28   3.4  
SB_29363| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)                 28   4.5  

>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -1

Query: 356 DQFNVTFCQFKNMSFSRYFCIL---NVCVTVQILNYR 255
           D++++TFC++   +  +YFCI     +C    IL +R
Sbjct: 271 DKYSLTFCKYHTRNVIKYFCITCDEAICRVCTILEHR 307


>SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026)
          Length = 301

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 78  ICSCVRHNFVIIVLMRNKFLHEKKKK 1
           IC  VRHN    +L   K L EKK+K
Sbjct: 210 ICKFVRHNIKAKILKEKKSLREKKEK 235


>SB_56066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 654

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 233 SPEIQMMIDNLIFALLRTHSKYKNIG*N 316
           +PE++ +   +IFAL+  H+  KN+G N
Sbjct: 455 NPEVRQLALEVIFALIDRHNNSKNLGLN 482


>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
          Length = 262

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 78  ICSCVRHNFVIIVLMRNKFLHEKKKK 1
           IC  VRHN    +L   K L EKK K
Sbjct: 171 ICKFVRHNIKAKILKEKKSLREKKDK 196


>SB_29363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 324 FKLTKCYVELITTKKRPTVSEIT 392
           F +TKCY+  +T K+RP+  + T
Sbjct: 3   FNVTKCYLLSVTKKRRPSCYQYT 25


>SB_24457| Best HMM Match : TPR_2 (HMM E-Value=1.4e-16)
          Length = 1134

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 324  FKLTKCYVELITTKKRPTVSEIT 392
            F +TKCY+  +T K+RP+  + T
Sbjct: 995  FNVTKCYLLSVTKKRRPSCYQYT 1017


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,201,022
Number of Sequences: 59808
Number of extensions: 239321
Number of successful extensions: 504
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)